View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_high_17 (Length: 236)
Name: NF1517_high_17
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 38255952 - 38255747
Alignment:
| Q |
16 |
gatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctaccttaccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38255952 |
gatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctaccttaccc |
38255853 |
T |
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| Q |
116 |
tccaacctatcatcataatataaaatatactatattgattaattaagccaatagaaataggcacacactagagaaagattcacaaatatagaaagttata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38255852 |
tccaacctatcatcataatataaaatatactatattgattaattaagccaatagaaataggcacacactagagaaagattcacaaatatagaaagttata |
38255753 |
T |
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| Q |
216 |
cctttg |
221 |
Q |
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|||||| |
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| T |
38255752 |
cctttg |
38255747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 45152128 - 45152019
Alignment:
| Q |
16 |
gatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctaccttaccc |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||| |||| |||| || || |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
45152128 |
gatatctgctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccc |
45152029 |
T |
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| Q |
116 |
tccaacctat |
125 |
Q |
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|||||||||| |
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| T |
45152028 |
tccaacctat |
45152019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 45141485 - 45141376
Alignment:
| Q |
16 |
gatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctaccttaccc |
115 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||| |||| ||| || || |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
45141485 |
gatatctgctataactacaaatgctccattttccacgaatgtcttcgctgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccc |
45141386 |
T |
|
| Q |
116 |
tccaacctat |
125 |
Q |
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|||||||||| |
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| T |
45141385 |
tccaacctat |
45141376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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