View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_high_20 (Length: 212)
Name: NF1517_high_20
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 32786802 - 32786878
Alignment:
| Q |
13 |
aatatggtgaggaaaatgcctatttccttaaaggccacacttaatcctttctcacatttaacaccaacaaaccaaac |
89 |
Q |
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| T |
32786802 |
aatatggtgaggaaaatgcctatttccttaaaggccacacttaatcctttctcacatttaacaccaacaaaccaaac |
32786878 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 32786947 - 32786983
Alignment:
| Q |
158 |
ggtttggtttgcatatttccacttcttcctccaaata |
194 |
Q |
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| T |
32786947 |
ggtttggtttgcatatttccacttcttcctccaaata |
32786983 |
T |
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