View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_high_6 (Length: 394)
Name: NF1517_high_6
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_high_6 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 3 - 394
Target Start/End: Complemental strand, 11859453 - 11859062
Alignment:
| Q |
3 |
gttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatca |
102 |
Q |
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| T |
11859453 |
gttggcaacatggctgcttcgtgttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatca |
11859354 |
T |
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| Q |
103 |
tcattcttaatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaa |
202 |
Q |
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| T |
11859353 |
ccattctcaatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaa |
11859254 |
T |
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| Q |
203 |
attggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaat |
302 |
Q |
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| T |
11859253 |
attggtgatgaagaccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaat |
11859154 |
T |
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| Q |
303 |
tccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctc |
394 |
Q |
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| T |
11859153 |
tccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctc |
11859062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 392
Target Start/End: Complemental strand, 12038168 - 12037862
Alignment:
| Q |
74 |
ttaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatc |
170 |
Q |
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| T |
12038168 |
ttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatctataacaagtaagaggcgtttctcatgatgagact---c |
12038072 |
T |
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| Q |
171 |
agtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttca |
270 |
Q |
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| T |
12038071 |
ggcaacactttttgctatagattcaacatcaaa--ggtt----------ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctca |
12037984 |
T |
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| Q |
271 |
caaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtt |
370 |
Q |
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| T |
12037983 |
caaacgagatgagcaagttttgttttgccaattccaggaacaccaacaataacaataacaacaggaacagcagcatcagtgttcttcaggttcaccagtt |
12037884 |
T |
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| Q |
371 |
tatctataatctccttcttctc |
392 |
Q |
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| T |
12037883 |
tatctataagctcttccttctc |
12037862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 11827037 - 11826945
Alignment:
| Q |
251 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag |
343 |
Q |
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| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcag |
11826945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 11903281 - 11903379
Alignment:
| Q |
222 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
320 |
Q |
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| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
11903379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 11827257 - 11827171
Alignment:
| Q |
61 |
ccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag |
144 |
Q |
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| T |
11827257 |
ccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
251 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
320 |
Q |
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| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
251 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
320 |
Q |
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| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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