View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1517_low_10 (Length: 373)
Name: NF1517_low_10
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 49341373 - 49341029
Alignment:
| Q |
19 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaaga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
49341373 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaataaatggaaagtacttttcaaaga |
49341274 |
T |
|
| Q |
119 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatccca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49341273 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgtcatctttttgtggtaaatccca |
49341176 |
T |
|
| Q |
219 |
aatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttt |
318 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341175 |
aatttcactgtccctgttaaacttccactcttctatatcatcttttaagaatagagaactccccaatgttcttagggccaaaggaagccctccacatttt |
49341076 |
T |
|
| Q |
319 |
tgtacaatttctttcccaatctccatcaattctggatagttcttctc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49341075 |
tgtacaatttctttcccaatctccatcaattttggatagttcttctc |
49341029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 49352751 - 49352405
Alignment:
| Q |
19 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaaga |
118 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |
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|
| T |
49352751 |
tcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaaga |
49352652 |
T |
|
| Q |
119 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatccca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||||| ||| |
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|
| T |
49352651 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcca |
49352552 |
T |
|
| Q |
219 |
aatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttt |
318 |
Q |
| |
|
||| |||||||| ||||||||| |||||||||| | |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
49352551 |
aatctcactgtctctgataaacttccactcttcaacatcaaattttaagaatagagaactccctaatgttcttagggccaaaggaagccctccacatttt |
49352452 |
T |
|
| Q |
319 |
tgtacaatttctttcccaatctccatcaattctggatagttcttctc |
365 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
49352451 |
tgtacaatttctttcccaatctccaccaattctggatattttttctc |
49352405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 19030706 - 19030651
Alignment:
| Q |
23 |
ccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcaca |
78 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||| |||| |
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|
| T |
19030706 |
ccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctcccataacaca |
19030651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 32783519 - 32783864
Alignment:
| Q |
20 |
cttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaagag |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| |||||| || |||| |||| |||||||| | ||||||||||| ||||| ||||| |||||| |
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|
| T |
32783519 |
cttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaacatccatattagtaaatgtaaagtccttttgaaagag |
32783618 |
T |
|
| Q |
120 |
agagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaa |
219 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| |||| |
|
|
| T |
32783619 |
ggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaa |
32783718 |
T |
|
| Q |
220 |
atttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacattttt |
319 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| | |||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32783719 |
atttcactgtctctgataaacttccactcttccacatcaacttttaggaatagagaactccccgatgttcttagggccaaaggaagccctccacattttt |
32783818 |
T |
|
| Q |
320 |
gtacaatttctttcccaatctccatcaattctggatagttcttctc |
365 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
32783819 |
gtacaatttctttcccaatcttcatcaattctggatagtttttctc |
32783864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 29602151 - 29602497
Alignment:
| Q |
19 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaaga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||| ||| |||| |||||| | ||| | || || |||| |||| ||||| |||| |
|
|
| T |
29602151 |
tcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttgaagtctttttcgaaga |
29602250 |
T |
|
| Q |
119 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatccca |
218 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || || |||||||||||||||| ||| |
|
|
| T |
29602251 |
gggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattcca |
29602350 |
T |
|
| Q |
219 |
aatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttt |
318 |
Q |
| |
|
||| ||| ||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29602351 |
aatctcattgtccctaacaaacttccactcttctatatcatcttttaagaacaataaactccccaatgttcttagggccaaaggaagccctccacatttt |
29602450 |
T |
|
| Q |
319 |
tgtacaatttctttcccaatctccatcaattctggatagttcttctc |
365 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |||||| || ||||| |
|
|
| T |
29602451 |
tgaacaatttctttcccaatctctatcaattttggatattttttctc |
29602497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 29751143 - 29750797
Alignment:
| Q |
19 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaaga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||| ||| |||| |||||| | ||| | ||||| |||| | |||| ||| |||||| |
|
|
| T |
29751143 |
tcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtggaagtcttttacaaaga |
29751044 |
T |
|
| Q |
119 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatccca |
218 |
Q |
| |
|
| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||| |||||||||||| || || |||||||||||||||| ||| |
|
|
| T |
29751043 |
gggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattcca |
29750944 |
T |
|
| Q |
219 |
aatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttt |
318 |
Q |
| |
|
||| ||| ||||||| | |||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29750943 |
aatctcattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttt |
29750844 |
T |
|
| Q |
319 |
tgtacaatttctttcccaatctccatcaattctggatagttcttctc |
365 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |||||| || ||||| |
|
|
| T |
29750843 |
tgaacaatttctttcccaatctctatcaattttggatattttttctc |
29750797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 29744110 - 29743769
Alignment:
| Q |
19 |
tcttccaaggttttacccatgtttggtggtggaagaaaaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaaga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| |||| | |||| ||| |||| |||||| | |||| | |||| ||||| ||||| ||| |||||| |
|
|
| T |
29744110 |
tcttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaaga |
29744011 |
T |
|
| Q |
119 |
gagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatccca |
218 |
Q |
| |
|
| |||||||| ||||||||| |||| |||||||| ||||| |||||| ||||||||||||||||||||||||| || || | |||||||||||||| ||| |
|
|
| T |
29744010 |
gggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattcca |
29743911 |
T |
|
| Q |
219 |
aatttcactgtccctgataaacctccactcttctatatcatctt----ttaagagtagagaactccccaatgttcttagggccaaaggaagccctccaca |
314 |
Q |
| |
|
||| ||| ||||||| | |||| |||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29743910 |
aatctcattgtccctaacaaacttccactcttcaatatcatcttttaattaagaacaatgaactccccaatgttcttagggccaaaggaagccctccaca |
29743811 |
T |
|
| Q |
315 |
tttttgtacaatttctttcccaatctccatcaattctggata |
356 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
29743810 |
tttttgcacaatttctttcccaatctctatcaattttggata |
29743769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 109 - 344
Target Start/End: Complemental strand, 35158171 - 35157936
Alignment:
| Q |
109 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtg |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |||||||| | |
|
|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
209 |
gtaaatcccaaatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccc |
308 |
Q |
| |
|
|||||| |||||| ||| ||||||| | |||| ||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
35158071 |
gtaaattccaaatctcattgtccctaacaaacttccactcttgtatatcaacttttaagaacagcgaactccccaatgtccttagggccaatggaagccc |
35157972 |
T |
|
| Q |
309 |
tccacatttttgtacaatttctttcccaatctccat |
344 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||| |
|
|
| T |
35157971 |
tccacatttaagcacaatatcttttccaatctccat |
35157936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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