View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1517_low_12 (Length: 359)
Name: NF1517_low_12
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 39568866 - 39568527
Alignment:
| Q |
1 |
ctagaggagtagcaaaggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagc |
100 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39568866 |
ctagaggtggagctaaggcaaaggaagatgtgggggtcacaacttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagc |
39568767 |
T |
|
| Q |
101 |
tnnnnnnntggttgaaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgac |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39568766 |
taaaaaaatggttgaaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtggc |
39568667 |
T |
|
| Q |
201 |
ttcggttgctgagatggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39568666 |
ttcggttgctgagatggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgcc |
39568567 |
T |
|
| Q |
301 |
gaagattgtgatttatttgcgcttggtgcagctttagagg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
39568566 |
gaagattgtgatttatttgcgcttggtgcagctttagagg |
39568527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 39561482 - 39561157
Alignment:
| Q |
15 |
aaggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctnnnnnnntggttg |
114 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
39561482 |
aaggcaaaggaagatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttg |
39561383 |
T |
|
| Q |
115 |
aaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgaga |
214 |
Q |
| |
|
|| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39561382 |
aagatatatttagtgagtggaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgaga |
39561283 |
T |
|
| Q |
215 |
tggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||| | |
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| T |
39561282 |
tggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaagaatggccatgatcatcacgcttggtgcagcgctgaagattgtgatat |
39561183 |
T |
|
| Q |
315 |
atttgcgcttggtgcagctttagagg |
340 |
Q |
| |
|
||| | |||||| |||||||| |||| |
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| T |
39561182 |
attcgtgcttggcgcagctttggagg |
39561157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 39581607 - 39581946
Alignment:
| Q |
1 |
ctagaggagtagcaaaggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagc |
100 |
Q |
| |
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||||||| | ||| ||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581607 |
ctagaggtggagctaaggcaaaggaagatatgggggtcacaacttattgggaaatttgagattccatggaaagtgattcttgaatcacaaaacatggagt |
39581706 |
T |
|
| Q |
101 |
tnnnnnnntggttgaaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgac |
200 |
Q |
| |
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| |||||||| ||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||| ||| | |
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| T |
39581707 |
taaaaaaatggttgaagatggatttggtgagtggaagtgattacaaagagggtatgttcacaacaccagaagtggaagtggagattaaaataaaagtagc |
39581806 |
T |
|
| Q |
201 |
ttcggttgctgagatggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgcc |
300 |
Q |
| |
|
||| ||| |||||||||| | | | |||||||| || |||||||||||||||||||||||||||||||| || ||||| ||| |||||||||| |||| |
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| T |
39581807 |
ttcagtttctgagatggagacgcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgca |
39581906 |
T |
|
| Q |
301 |
gaagattgtgatttatttgcgcttggtgcagctttagagg |
340 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| |
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| T |
39581907 |
gaagattgtgatatatttgcgcttggtgcagctttggagg |
39581946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 39571665 - 39571344
Alignment:
| Q |
19 |
caaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctnnnnnnntggttgaaaa |
118 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| | |||||||||| |
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| T |
39571665 |
caaagaaagatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaagcacaaaacatggagttaaaaaaatggttgaaaa |
39571566 |
T |
|
| Q |
119 |
tggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgagatgga |
218 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||| |||| ||||||||| |
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| T |
39571565 |
tggatttggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatgga |
39571466 |
T |
|
| Q |
219 |
aaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgatttattt |
318 |
Q |
| |
|
||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||| |||||| ||||| |
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| T |
39571465 |
gaagcaaaataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatattt |
39571366 |
T |
|
| Q |
319 |
gcgcttggtgcagctttagagg |
340 |
Q |
| |
|
|| | ||||||||||| |||| |
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| T |
39571365 |
gcattcggtgcagctttggagg |
39571344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 39585261 - 39585565
Alignment:
| Q |
16 |
aggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctnnnnnnntggttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
39585261 |
aggcaaaggaagatgtgggggtcacaacttattgggaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttga |
39585360 |
T |
|
| Q |
116 |
aaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgagat |
215 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||| ||| |||||||||||||||| |
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|
| T |
39585361 |
aaatggaatttgtgagtggaagtgattgcaaagagggtatgttcacaacaacagaagtggaagtggagattaaaataaaagttccttcggttgctgagat |
39585460 |
T |
|
| Q |
216 |
ggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgattta |
315 |
Q |
| |
|
||| || || ||||| | || |||||||| |||||||||||||||||||||||||||||| ||||| | || ||||||| | | |||||||||||| || |
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|
| T |
39585461 |
ggagaacaaaaataaatggagattgaataactggaatgagtgtggatgcaaaaatggtcataatcatcaagcatggtgcaacactgaagattgtgatata |
39585560 |
T |
|
| Q |
316 |
tttgc |
320 |
Q |
| |
|
||||| |
|
|
| T |
39585561 |
tttgc |
39585565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 39566191 - 39565880
Alignment:
| Q |
15 |
aaggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctnnnnnnntggttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
39566191 |
aaggcaaaggaagatgtgggggtcacaacttattgggaaatgtgagattccatggaaagtgattcttgaatcaaaaaacatggagttaaaaaaatggttg |
39566092 |
T |
|
| Q |
115 |
aaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgaga |
214 |
Q |
| |
|
|| ||||||||||||||| | ||||||| |||||||| ||||||| ||| ||||||||||||||||| |||||||||| ||| | ||||||||||||| |
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|
| T |
39566091 |
aagatggatttggtgagtggcagtgatttcaaagagggtatgttcataacgccagaagtggaagtggagattaaaataaaagtagcctcggttgctgaga |
39565992 |
T |
|
| Q |
215 |
tggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgattt |
314 |
Q |
| |
|
|||| ||| | ||||| || || |||||||||||||||||||||||||||||||| || ||||| ||| |||||||||| |||| ||||| |||||| | |
|
|
| T |
39565991 |
tggagaagcaaaataacaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgcagaagagtgtgatat |
39565892 |
T |
|
| Q |
315 |
atttgcgcttgg |
326 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39565891 |
atttgcgtttgg |
39565880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 39575060 - 39575365
Alignment:
| Q |
15 |
aaggcaaaggaagatgtgggggtcacagcttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctnnnnnnntggttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
39575060 |
aaggcaaaggaagatgtgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttg |
39575159 |
T |
|
| Q |
115 |
aaaatggatttggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgaga |
214 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||| ||| ||| ||| || | ||||||||||| |||||||||| ||| |||||||||| |||| |
|
|
| T |
39575160 |
aagatggatttgttgagtggaagtgattgcaaagagggtatattcataacgccgtaggtggaagtggagattaaaataaaagtagcttcggttgcggaga |
39575259 |
T |
|
| Q |
215 |
tggaaaagaagaataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgattt |
314 |
Q |
| |
|
|||| ||| | |||||||| || |||||||||||||| |||||||||| |||||||||||||||||| |||||||||| | | |||||||||||| | |
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|
| T |
39575260 |
tggagaagcaaaataagaggagattgaataattggaacaagtgtggatgtaaaaatggtcatgatcatcgagcttggtgcaacactgaagattgtgatat |
39575359 |
T |
|
| Q |
315 |
atttgc |
320 |
Q |
| |
|
|||||| |
|
|
| T |
39575360 |
atttgc |
39575365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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