View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1517_low_13 (Length: 340)

Name: NF1517_low_13
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1517_low_13
NF1517_low_13
[»] chr4 (9 HSPs)
chr4 (129-326)||(53998988-53999185)
chr4 (73-123)||(4473076-4473126)
chr4 (73-130)||(32564847-32564904)
chr4 (73-130)||(7209058-7209115)
chr4 (129-161)||(25063378-25063410)
chr4 (129-161)||(37219861-37219893)
chr4 (129-161)||(42671898-42671930)
chr4 (129-160)||(11314055-11314086)
chr4 (129-161)||(17655660-17655692)
[»] chr7 (3 HSPs)
chr7 (115-161)||(29737374-29737420)
chr7 (85-131)||(28885512-28885558)
chr7 (90-132)||(32553681-32553723)
[»] chr5 (2 HSPs)
chr5 (73-130)||(8564912-8564969)
chr5 (90-131)||(34547730-34547771)
[»] scaffold0001 (1 HSPs)
scaffold0001 (90-129)||(504626-504665)
[»] chr8 (6 HSPs)
chr8 (129-164)||(30834859-30834894)
chr8 (89-130)||(38125618-38125659)
chr8 (129-161)||(3890418-3890450)
chr8 (129-161)||(37132484-37132516)
chr8 (132-161)||(1886643-1886672)
chr8 (129-161)||(24844664-24844696)
[»] chr3 (8 HSPs)
chr3 (122-161)||(33839765-33839804)
chr3 (129-161)||(40328061-40328093)
chr3 (129-161)||(47738341-47738373)
chr3 (129-168)||(46919117-46919156)
chr3 (73-130)||(42380740-42380797)
chr3 (73-130)||(42409454-42409511)
chr3 (129-161)||(24343779-24343811)
chr3 (129-161)||(36864836-36864868)
[»] chr2 (8 HSPs)
chr2 (84-130)||(9154164-9154210)
chr2 (73-130)||(12457018-12457075)
chr2 (85-130)||(33810617-33810662)
chr2 (73-130)||(36887339-36887396)
chr2 (73-130)||(41877555-41877612)
chr2 (129-161)||(22592942-22592974)
chr2 (85-130)||(12890265-12890310)
chr2 (102-130)||(12457065-12457093)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-130)||(143351-143408)
[»] chr6 (2 HSPs)
chr6 (129-161)||(29693675-29693707)
chr6 (73-129)||(30416941-30416997)
[»] scaffold0064 (1 HSPs)
scaffold0064 (89-130)||(59434-59475)
[»] chr1 (4 HSPs)
chr1 (132-161)||(27523062-27523091)
chr1 (89-129)||(7255168-7255208)
chr1 (129-161)||(44690825-44690857)
chr1 (129-161)||(52064381-52064413)
[»] scaffold0263 (1 HSPs)
scaffold0263 (98-130)||(13373-13405)
[»] scaffold0002 (1 HSPs)
scaffold0002 (98-130)||(92001-92033)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 129 - 326
Target Start/End: Original strand, 53998988 - 53999185
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaatgatggttatgtcggacgaagacggggtgacaatgaagacagc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  53998988 tagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaatgatggttatgtcggacgaagatggggtgacaatgaagacagt 53999087  T
Q  229 ggcggcattgatgatggtgacaaaaggtgcaatgatggccatgctggaacgacgacaagcgtggctgtcgaaacggaggcaacgtcaaagttgatgat 326  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  53999088 ggcgacattgatgatggtgacaaaaggtgcaatgatggccatgctggaacgacgacaagcgtggcagtcgaaatggaggcaacatcaaagttgatgat 53999185  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 4473076 - 4473126
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacaga 123  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  4473076 atgtaagcactctttgcctctaataaaaaggtgcttacatatagggacaga 4473126  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 32564847 - 32564904
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  32564847 atgtaagcactctttgcctctaataaaagggtgcttacatatagggacggagggagta 32564904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 7209115 - 7209058
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||| |||||  |||||||||||| ||||||| |||||||||| |||||||||    
T  7209115 atgtaagcactctttgtctctaataaaaaagtgcttagatatagggactgagggagta 7209058  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 25063378 - 25063410
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  25063378 tagatatcaagaatgattttatcaagaaagatt 25063410  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 37219893 - 37219861
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  37219893 tagatatcaagaatgattttatcaagaaagatt 37219861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 42671930 - 42671898
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  42671930 tagatatcaagaatgattttatcaagaaagatt 42671898  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 11314055 - 11314086
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagat 160  Q
    ||||||||||||||||||||||||||||||||    
T  11314055 tagatatcaagaatgattttatcaagaaagat 11314086  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 17655692 - 17655660
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    ||||||| |||||||||||||||||||||||||    
T  17655692 tagatattaagaatgattttatcaagaaagatt 17655660  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29737420 - 29737374
Alignment:
Q  115 agggacagagggagtagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29737420 agggacggagggagtagatatcaagaatgattttatcaagaaagatt 29737374  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 28885512 - 28885558
Alignment:
Q  85 ttttcctctaataaaaaggtgcttacatatagggacagagggagtag 131  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||    
T  28885512 ttttcctctaataaaagggtgcttacatataaggacggagggagtag 28885558  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 32553723 - 32553681
Alignment:
Q  90 ctctaataaaaaggtgcttacatatagggacagagggagtaga 132  Q
    ||||||||||| |||| |||||||||||||| |||||||||||    
T  32553723 ctctaataaaagggtgtttacatatagggacggagggagtaga 32553681  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 8564912 - 8564969
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||    
T  8564912 atgtaagcatttttttcttctaataaaaaggtgcttacatatagggacggagggagta 8564969  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 34547771 - 34547730
Alignment:
Q  90 ctctaataaaaaggtgcttacatatagggacagagggagtag 131  Q
    |||| ||||||||||| |||||||||||||||||| ||||||    
T  34547771 ctctgataaaaaggtgtttacatatagggacagagagagtag 34547730  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 504626 - 504665
Alignment:
Q  90 ctctaataaaaaggtgcttacatatagggacagagggagt 129  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  504626 ctctaataaaaaggtgcttacatatagggacggagggagt 504665  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 30834859 - 30834894
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagattaaa 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  30834859 tagatatcaagaatgattttatcaagaaagattaaa 30834894  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 38125618 - 38125659
Alignment:
Q  89 cctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  38125618 cctctaataaaagggtgcttacatatagggacggagggagta 38125659  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 3890418 - 3890450
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  3890418 tagatatcaagaatgattttatcaagaaagatt 3890450  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 37132484 - 37132516
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  37132484 tagatatcaagaatgattttatcaagaaagatt 37132516  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 1886672 - 1886643
Alignment:
Q  132 atatcaagaatgattttatcaagaaagatt 161  Q
    ||||||||||||||||||||||||||||||    
T  1886672 atatcaagaatgattttatcaagaaagatt 1886643  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 24844664 - 24844696
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||| ||||||||||||||||||||||    
T  24844664 tagatatcaataatgattttatcaagaaagatt 24844696  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 33839804 - 33839765
Alignment:
Q  122 gagggagtagatatcaagaatgattttatcaagaaagatt 161  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  33839804 gagggagtatatatcaagaatgattttatcaagaaagatt 33839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 40328093 - 40328061
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  40328093 tagatatcaagaatgattttatcaagaaagatt 40328061  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 47738373 - 47738341
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  47738373 tagatatcaagaatgattttatcaagaaagatt 47738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 46919156 - 46919117
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagattaaataat 168  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  46919156 tagatatcaagaatgattttatcaaaaaagattcaataat 46919117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 42380740 - 42380797
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||  |||| |||||||||||| |||  ||| ||||||||||||||||||||    
T  42380740 atgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42380797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 42409454 - 42409511
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||  |||| |||||||||||| |||  ||| ||||||||||||||||||||    
T  42409454 atgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42409511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 24343811 - 24343779
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  24343811 tagatatcaagaatgattttatcaaaaaagatt 24343779  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 36864836 - 36864868
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  36864836 tagatatcaagaatgattttatcaaaaaagatt 36864868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 9154164 - 9154210
Alignment:
Q  84 cttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||    
T  9154164 cttttcctctaataaaagggtgcttagatatagggacggagggagta 9154210  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 12457075 - 12457018
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||  |||| |||||||||||| |||||||| |||||||||| |||||||||    
T  12457075 atgtaagcaccctttgcctctaataaaagggtgcttagatatagggacggagggagta 12457018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 33810662 - 33810617
Alignment:
Q  85 ttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||    
T  33810662 ttttcctctaataaaagggtgcttacatatagggacgaagggagta 33810617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 36887339 - 36887396
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||| | ||||||| |||||||| |||| |||||||||||||| |||||||||    
T  36887339 atgtaagcatttttttcctataataaaatggtgtttacatatagggacggagggagta 36887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 41877612 - 41877555
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||| ||||||| ||||||||||  ||||||| ||||||||||| ||||||||    
T  41877612 atgtaagcactcttttcttctaataaaagtgtgcttagatatagggacaaagggagta 41877555  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 22592974 - 22592942
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  22592974 tagatatcaagaatgattttatcaagaaagatt 22592942  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 12890310 - 12890265
Alignment:
Q  85 ttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||    
T  12890310 ttttcctctaataaaaggatgcttagatatagggacggagggagta 12890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 12457065 - 12457093
Alignment:
Q  102 ggtgcttacatatagggacagagggagta 130  Q
    |||||||||||||||||||||||||||||    
T  12457065 ggtgcttacatatagggacagagggagta 12457093  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 143408 - 143351
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||  |||| |||||||||||| |||| ||||||||||||||||||| ||||    
T  143408 atgtaagcatcctttgcctctaataaaagggtgtttacatatagggacagaggaagta 143351  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 29693707 - 29693675
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||||||||||||||||||||||||||    
T  29693707 tagatatcaagaatgattttatcaagaaagatt 29693675  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 30416941 - 30416997
Alignment:
Q  73 atgtaagcaatcttttcctctaataaaaaggtgcttacatatagggacagagggagt 129  Q
    ||||||| | ||||| |||||||||||| | ||||||||||||||| | ||||||||    
T  30416941 atgtaagaactctttgcctctaataaaaggatgcttacatataggggcggagggagt 30416997  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 59434 - 59475
Alignment:
Q  89 cctctaataaaaaggtgcttacatatagggacagagggagta 130  Q
    |||||||||||| ||||||||||||||||||  |||||||||    
T  59434 cctctaataaaagggtgcttacatatagggatggagggagta 59475  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 27523062 - 27523091
Alignment:
Q  132 atatcaagaatgattttatcaagaaagatt 161  Q
    ||||||||||||||||||||||||||||||    
T  27523062 atatcaagaatgattttatcaagaaagatt 27523091  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 7255168 - 7255208
Alignment:
Q  89 cctctaataaaaaggtgcttacatatagggacagagggagt 129  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  7255168 cctctaataaaagggtgcttacatataggaacggagggagt 7255208  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 44690825 - 44690857
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||| ||||||||||||||||||||||    
T  44690825 tagatatcaataatgattttatcaagaaagatt 44690857  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 52064381 - 52064413
Alignment:
Q  129 tagatatcaagaatgattttatcaagaaagatt 161  Q
    |||||||||| ||||||||||||||||||||||    
T  52064381 tagatatcaaaaatgattttatcaagaaagatt 52064413  T

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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 13405 - 13373
Alignment:
Q  98 aaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||||||||||||||||| |||||||||    
T  13405 aaaaggtgcttacatatagggacggagggagta 13373  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 92033 - 92001
Alignment:
Q  98 aaaaggtgcttacatatagggacagagggagta 130  Q
    ||||||||||||||||||||||| |||||||||    
T  92033 aaaaggtgcttacatatagggacggagggagta 92001  T

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