View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_17 (Length: 305)
Name: NF1517_low_17
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 93 - 290
Target Start/End: Original strand, 54912852 - 54913050
Alignment:
| Q |
93 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagg-attaagaaaagaaacctcatgatattgacacgaaga |
191 |
Q |
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| T |
54912852 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagggattaagaaaagaaacctcatgatattgacacgaaga |
54912951 |
T |
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| Q |
192 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatacagtaaaccttgcaaaagggtgtttccac |
290 |
Q |
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| T |
54912952 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatatagtaaaccttgcaaaagggtgtttccac |
54913050 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 11464684 - 11464742
Alignment:
| Q |
198 |
ctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagta |
256 |
Q |
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| T |
11464684 |
ctaagctcaatgaaaagctcatacatctgacccagatcagcagcgttgccatgagagta |
11464742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 7338061 - 7338093
Alignment:
| Q |
221 |
catctgacccaaatcagcagcattaccatgaga |
253 |
Q |
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| T |
7338061 |
catctgacccaaatcagcagcatttccatgaga |
7338093 |
T |
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