View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_18 (Length: 304)
Name: NF1517_low_18
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 2468028 - 2467797
Alignment:
| Q |
49 |
atcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
148 |
Q |
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| T |
2468028 |
atcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
2467929 |
T |
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| Q |
149 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagcccgaaaaatgttggtgaattgaaagcg |
248 |
Q |
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| T |
2467928 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagaccgaaaaatgttggtgaattgaaagcg |
2467829 |
T |
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| Q |
249 |
tggtggtaatttgagattgcagcgaggagtag |
280 |
Q |
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| T |
2467828 |
tggtggtaatttgagattgcagcgaggagtag |
2467797 |
T |
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