View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1517_low_22 (Length: 235)
Name: NF1517_low_22
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37335930 - 37336152
Alignment:
| Q |
1 |
tctcttacgtaagcaagcataattagtggaggactgtgtcgagaattgcacatatcagaatgaattcatgagcagcatctttggttcttaattgcatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37335930 |
tctcttacgtaagcaagcataattagtggaggactgtgtcgagaattgcacatatcagaatgaattcatgagcagcatctttggttcttaattgcatcaa |
37336029 |
T |
|
| Q |
101 |
ttggattggaagacatttacg-ttttttcactgttatttagtaaaattgtctttaaggagctgttttggtgtgtttgttgtagtgattaatagttgaaag |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37336030 |
ttggattggaagacatttacgtttttttcactgttatttagtaaaattgtctttaaggagctgttttggtgtgtttgttgtagtgattaatagttgaaag |
37336129 |
T |
|
| Q |
200 |
tggacctgtaaaaggaagtattt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37336130 |
tggacctgtaaaaggaagtattt |
37336152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 26506663 - 26506592
Alignment:
| Q |
132 |
gttatttagtaaaattgtctttaaggagctgttttggtgtgtttgttgtagtgattaatagttgaaagtgga |
203 |
Q |
| |
|
|||| |||| |||| ||||||| ||||||||||||| |||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
26506663 |
gttaattagcaaaaatgtctttgaggagctgttttgttgtgtttgatgtagtggttaatagatgaaagtgga |
26506592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University