View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_23 (Length: 213)
Name: NF1517_low_23
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32579477 - 32579270
Alignment:
| Q |
1 |
cattattggttcctgcaatggattgctctgtttgcgcaattatgcttggacaacattgcagccagaacaacattggttacgtttttggaacccagccact |
100 |
Q |
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| T |
32579477 |
cattattggttcctgcaatgggttgctctgtttgcgcaattatgcttggacaacattgcagccagaacaacattggttacgtttttggaacccagccact |
32579378 |
T |
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| Q |
101 |
aacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgatatttcaaacgacgattataaggtggtggctttttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32579377 |
aacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttggatatgatatttcaaacgacgattataaggtggtggctttttccg |
32579278 |
T |
|
| Q |
201 |
tgaacgag |
208 |
Q |
| |
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|||||||| |
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| T |
32579277 |
tgaacgag |
32579270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 19888252 - 19888126
Alignment:
| Q |
72 |
attggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgatatttcaaa |
171 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
19888252 |
attggtttcgtttttggaacccagccacaaacacattatctgaagaattagggtgtttaaacgagtttttcaggttaacatttggatatgatatttcaaa |
19888153 |
T |
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| Q |
172 |
cgacgattataaggtggtggctttttc |
198 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
19888152 |
tgacacttataaggtggtggctttttc |
19888126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 19779123 - 19779257
Alignment:
| Q |
64 |
agaacaacattggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgat |
163 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||| |||||||||||| || |||||||||||||| |||||||| ||| |||| ||| |||||||| |
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| T |
19779123 |
agaacatcattggtttcgtttttggaacccagccacaaacacattatctgaagatttagggtgtttaaacaagtttttgaggctaacatttggatatgat |
19779222 |
T |
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| Q |
164 |
atttcaaacgacgattataaggtggtggctttttc |
198 |
Q |
| |
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|||||||| ||| ||||||||||||||| ||||| |
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| T |
19779223 |
atttcaaatgacacttataaggtggtggccttttc |
19779257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 19351584 - 19351468
Alignment:
| Q |
74 |
tggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgatatttcaaacg |
173 |
Q |
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|
||||||||||| |||||||||||||| || ||||||||| ||| | |||||| || || ||| ||||| | |||||| ||| | |||||||||||||| | |
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| T |
19351584 |
tggttacgtttctggaacccagccacaaagacattatctgaaaaaatagggtattcaactaaattttttaagttaacatttggctatgatatttcaaatg |
19351485 |
T |
|
| Q |
174 |
acgattataaggtggtg |
190 |
Q |
| |
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|| ||||||||||||| |
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| T |
19351484 |
acacttataaggtggtg |
19351468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 19779064 - 19779092
Alignment:
| Q |
5 |
attggttcctgcaatggattgctctgttt |
33 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
19779064 |
attggttcctgcaatggattgctctgttt |
19779092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 14748923 - 14749048
Alignment:
| Q |
73 |
ttggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgatatttcaaac |
172 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||| || |||||| |||||||| ||| ||||||||||||||||| |
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| T |
14748923 |
ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac |
14749022 |
T |
|
| Q |
173 |
gacgattataaggtggtggctttttc |
198 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
14749023 |
gacacttataaggtggtggccttttc |
14749048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 18909351 - 18909230
Alignment:
| Q |
71 |
cattggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttagatatgatatttcaa |
170 |
Q |
| |
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|||||||| ||||| |||||||||| ||| |||||||||||| ||| |||||| |||| || | |||||||||||| || | ||||||||| || |
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| T |
18909351 |
cattggttccgtttatggaacccagtcacgaacacattatctgaaaaattaggtaacttaaccaactatttcaggttaacattcggctatgatattataa |
18909252 |
T |
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| Q |
171 |
acgacgattataaggtggtggc |
192 |
Q |
| |
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| ||| ||||||||||||||| |
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|
| T |
18909251 |
atgacatttataaggtggtggc |
18909230 |
T |
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