View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_3 (Length: 467)
Name: NF1517_low_3
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 22978543 - 22978799
Alignment:
| Q |
24 |
cgcaatcacgtgccacaaaataacggtattaacaacttagacagagacaaatacaaactaaaactacatttgggtaaaaatggtagaccccaataaaatc |
123 |
Q |
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| T |
22978543 |
cgcaatcacgtgccacaaaacaacggtattaacgacttcgacagagacaaatacaaactaaaactacatttgggtaaaaatggtagaccccaataaaatc |
22978642 |
T |
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| Q |
124 |
cacacatttatataacaaagtaatcataaaaatttgattttggcagaacctaaatgacacaatcatcctacacaaacat-atgtcagtcacaacttgcaa |
222 |
Q |
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| T |
22978643 |
cacacatttatataacaaagtaatcataaaaatttgattttggcagaacctaaatgacacaatcatcctacacaaacataatgtcagtcacaacttgcaa |
22978742 |
T |
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| Q |
223 |
atggtacattttgtttgtcaattgttatttattcatttagaaattagaagctctatt |
279 |
Q |
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| T |
22978743 |
atggtacattttgtttgtcaattgttatttattcatttagaaattagaagccctatt |
22978799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 22978888 - 22978943
Alignment:
| Q |
366 |
gaaattgaaaggagaaaaagagagggttttgcttacagtgagggtttgcgttgcgc |
421 |
Q |
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| T |
22978888 |
gaaattgaaaggaaaaaaagagagggttttgcatacagtgagggtttgcgttgcgc |
22978943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 35 - 279
Target Start/End: Complemental strand, 1124076 - 1123804
Alignment:
| Q |
35 |
gccacaaaataacggtattaacaacttagacagagacaaatacaaactaaaactacatttgggtaaaaatggtagaccccaataaaa------------- |
121 |
Q |
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| T |
1124076 |
gccacaaaacaacggtattaacaacttcgacagagacaaatacaaactaaaactacatttgggtaaaaatggtaaaacccaataaaaatgataactttac |
1123977 |
T |
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| Q |
122 |
-------tccacacatttatataacaaagtaatcataaaaatttgattttggcagaacctaaatgacacaatcatcctacacaaacat-atgtcagtcac |
213 |
Q |
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| T |
1123976 |
aataaaatccacacatttatataacaaagtaatcataaaaatttgattttggcagaacctaaatcacacaatcatcctacacaaacataatgtcagtcac |
1123877 |
T |
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| Q |
214 |
aacttgcaaatggtacattttgtttgtca-------attgttatttattcatttagaaattagaagctctatt |
279 |
Q |
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| T |
1123876 |
aacttgcaaatggtacattttgtttgtcaatgtttgattgttatttattcatttagaaattagatgccctatt |
1123804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 1123712 - 1123657
Alignment:
| Q |
366 |
gaaattgaaaggagaaaaagagagggttttgcttacagtgagggtttgcgttgcgc |
421 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1123712 |
gaaattgaaaggaaaaaaagagagggttttgcttacagtgagggttagcgttgcgc |
1123657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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