View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_6 (Length: 398)
Name: NF1517_low_6
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 21613908 - 21613525
Alignment:
| Q |
1 |
atttcaacaacttcctttcttttcttgtatcgtacgtctccatgcaacttgtataaaacaagcagcccacgttctccattggtgcgagtgaaaccttaac |
100 |
Q |
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| T |
21613908 |
atttcaacaactacctttcttttcttgtatcgtacgtctccatgcaacttgtataaaacaagcagcccacgttctccattggtgcgagtgaaaccttaac |
21613809 |
T |
|
| Q |
101 |
ttgttcctcaattgcttgctatgcaaccttctaaactgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcagatatggctt |
200 |
Q |
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| T |
21613808 |
ttgttcctcaattgcttgctatgcaaccttctaaactgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcagatatggctt |
21613709 |
T |
|
| Q |
201 |
taaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggccaatacgaca |
300 |
Q |
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| T |
21613708 |
taaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcgccacaaaaatcacctgggccaatacgaca |
21613609 |
T |
|
| Q |
301 |
tgagttgaagaaaccagtgcggcctccatccgttgtgtaggaatcaagatttcctcttattatgaatagcatctcgttcacagg |
384 |
Q |
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| T |
21613608 |
tgagttgaagaaaccagtgcggcctccatccgttgtgtaggaatcaagatttcctcttattatgaatagcatctcgttcacagg |
21613525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 381
Target Start/End: Original strand, 40510452 - 40510796
Alignment:
| Q |
37 |
tctccatgcaacttgtataaaacaagcagcccacgttctccattggtgcgagtgaaaccttaacttgttcctcaattgcttgctatgcaaccttctaaac |
136 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||||||| || | ||| || || || | ||| | ||| || ||||| | |||||||| |
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| T |
40510452 |
tctccatgcagcttgaataaaacaagcagcccaagttctccattggtgtgaataaaatctgaatttatgcctaagttgtttactatgtagtcttctaaat |
40510551 |
T |
|
| Q |
137 |
tgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcagatatggctttaaccgttcgagtcgaagaaggaattaccatagtcg |
236 |
Q |
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||||||||||||||||| | ||||| ||||| |||||||| ||||||||||| || | |||||||| |||| || || ||||| | || || | | | |
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| T |
40510552 |
tgagatgcaacaaacttaagatcttcagctatgagtgcaaaagcttctacttctgagaaagctttaactgttcttgttgaggaagggagtatcacacttg |
40510651 |
T |
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| Q |
237 |
gtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggccaatacgacatgagttgaagaaaccagtgcggcctccatccgttgt |
336 |
Q |
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||| |||||| || |||||||| || ||||| ||||| || ||||| ||||| || || | ||||||||||||||| || |||||||||| ||||| |
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| T |
40510652 |
gtcttggatctaaggcccatgttaagagctcttcaccacagaaatcgcctggaccgattctacatgagttgaagaatccgtcacggcctccatttgttgt |
40510751 |
T |
|
| Q |
337 |
gtaggaatcaagatttcctcttattatgaatagcatctcgttcac |
381 |
Q |
| |
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||| |||||||||| ||||| |||||||| ||||| |||||||| |
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| T |
40510752 |
gtaagaatcaagatggcctctaattatgaagagcatttcgttcac |
40510796 |
T |
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