View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_low_8 (Length: 392)
Name: NF1517_low_8
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 37037912 - 37037536
Alignment:
| Q |
20 |
gcatggaccacgtttcttcatatctgtgtcaatccttttctcggactagctgtgaataagaagttttattgataaaagaatcagtttacaaaaaccttca |
119 |
Q |
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| T |
37037912 |
gcatggaccacgtttcttcatatctgtgtcaatccttttctcggactagctgtgaataagaaattttattgataaaagaatcagtttacaaaaaccttca |
37037813 |
T |
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| Q |
120 |
aatatgaagaatacaaccacaagacactca-------------------tatagaaagggttccaaaagttgtaggtatatacatagagagggttattat |
200 |
Q |
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| T |
37037812 |
aatatgaagaatacaaccacaagacactcaaaaactatatataaaatcatatagagagggttccaaaagttgtaggtata--catagagagggttattat |
37037715 |
T |
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| Q |
201 |
gttacacacacacaaaaattgagagggttatgaaaaataaaactcggatacaagnnnnnnntagtattcaaccataaatcatcaataattatataaatgt |
300 |
Q |
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| T |
37037714 |
gttacacacacacaaaaattgagagggttatgaaaaataaaactcgcatacaagaaaaaaatagtattcaaccattaatcatcaataattatataaatgt |
37037615 |
T |
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| Q |
301 |
tgaaaaatttcataactttcataccttcttgcttgtatttttcttactagcctttcacaattcgtcacttagcttcttc |
379 |
Q |
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| T |
37037614 |
tgaaaaatttcataactttcataccttcttgcttgtatttttcttacaagtctttcacaattcgtcacttagcttcttc |
37037536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 37017080 - 37016875
Alignment:
| Q |
20 |
gcatggaccacgtttcttcatatctgtgtc-aatccttttctcggactagctgtgaataagaagttttattgataaaagaatcagtttacaaaaaccttc |
118 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| | || ||||||| |
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| T |
37017080 |
gcatggaccacgtctcttcatatttgtgtataatccttttcttggactagctagaaataagaaattttattgataaaagaatcagttaaaaataaccttc |
37016981 |
T |
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| Q |
119 |
aaatatgaagaatacaaccacaagacactc-------atatagaaagggttccaaaagttgtaggtatatacatagagagggttattatgttacacacac |
211 |
Q |
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| T |
37016980 |
aaatatgaataatacaaacacaagacactcaaaaactatatagaaagggttctaaaatttgcagg--tatacatagagaggggtattatgtaacacacac |
37016883 |
T |
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| Q |
212 |
acaaaaat |
219 |
Q |
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| T |
37016882 |
aaaaaaat |
37016875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 37016871 - 37016758
Alignment:
| Q |
266 |
attcaaccataaatcatcaataattatataaatgttgaaaaatttcataactttcataccttcttgcttgtatttttcttactagcctttcacaattcgt |
365 |
Q |
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|||||||||| |||| ||| ||||||| |||||| |||||||| || || |||||||||| ||||||||| |||||||| | || | |||||||||| | |
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| T |
37016871 |
attcaaccattaatcttcagtaattatctaaatgcagaaaaattccaaaattttcatacctccttgcttgtgtttttcttgcgagtcattcacaattcat |
37016772 |
T |
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| Q |
366 |
cacttagcttcttc |
379 |
Q |
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|||||||||||||| |
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| T |
37016771 |
cacttagcttcttc |
37016758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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