View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1517_low_9 (Length: 383)

Name: NF1517_low_9
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1517_low_9
NF1517_low_9
[»] chr3 (11 HSPs)
chr3 (232-368)||(1077748-1077883)
chr3 (232-368)||(1050844-1050980)
chr3 (234-368)||(1091628-1091762)
chr3 (34-129)||(28784674-28784767)
chr3 (234-368)||(1107990-1108124)
chr3 (34-129)||(48707585-48707678)
chr3 (34-96)||(48023921-48023983)
chr3 (70-129)||(5353449-5353506)
chr3 (34-78)||(5354551-5354595)
chr3 (196-231)||(5353345-5353380)
chr3 (196-231)||(28784835-28784870)
[»] chr8 (4 HSPs)
chr8 (34-129)||(44734313-44734406)
chr8 (34-124)||(44732002-44732090)
chr8 (196-231)||(44732164-44732199)
chr8 (196-231)||(44734477-44734512)
[»] chr5 (4 HSPs)
chr5 (34-129)||(32798167-32798260)
chr5 (34-129)||(32800479-32800572)
chr5 (196-234)||(32798327-32798365)
chr5 (196-231)||(32800639-32800674)
[»] chr2 (8 HSPs)
chr2 (34-129)||(45336420-45336513)
chr2 (34-129)||(45338732-45338825)
chr2 (34-95)||(1454088-1454149)
chr2 (35-95)||(14662493-14662553)
chr2 (34-129)||(17649032-17649125)
chr2 (33-89)||(132826-132882)
chr2 (196-231)||(45336580-45336615)
chr2 (196-231)||(45338892-45338927)
[»] chr1 (4 HSPs)
chr1 (35-129)||(9535417-9535509)
chr1 (34-129)||(1550317-1550411)
chr1 (50-96)||(47695723-47695769)
chr1 (196-231)||(1550478-1550513)
[»] chr4 (3 HSPs)
chr4 (33-128)||(22804771-22804864)
chr4 (196-231)||(22804932-22804967)
chr4 (35-95)||(7230887-7230946)
[»] chr7 (2 HSPs)
chr7 (32-129)||(13108714-13108808)
chr7 (34-129)||(13111006-13111099)
[»] chr6 (1 HSPs)
chr6 (32-95)||(6723624-6723687)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 232 - 368
Target Start/End: Original strand, 1077748 - 1077883
Alignment:
Q  232 ggtatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 331  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1077748 ggtatataacaactatttgaatttt-gtaggcttggaggttatggaaagagggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 1077846  T
Q  332 catctgaagctttaagatgcatacaagttggtctttt 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  1077847 catctgaagctttaagatgcatacaagttggtctttt 1077883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 232 - 368
Target Start/End: Original strand, 1050844 - 1050980
Alignment:
Q  232 ggtatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 331  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  1050844 ggtatatgacaactatttgaatttttgtaggcttggaggttatggaaagagggaaattcagaagaattaattgatgattgtctaaaggactcatatattc 1050943  T
Q  332 catctgaagctttaagatgcatacaagttggtctttt 368  Q
    |||||||||||||||||| ||||||||||||||||||    
T  1050944 catctgaagctttaagatccatacaagttggtctttt 1050980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 1091628 - 1091762
Alignment:
Q  234 tatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattcca 333  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  1091628 tatatgacaactatttttatttttgtaggcttggaggttatggaaagagggaaattcggaagaattgattgatgattgtctaagggactcatatattcca 1091727  T
Q  334 tctgaagctttaagatgcatacaagttggtctttt 368  Q
    |||||||||||||||||||||||||||||||||||    
T  1091728 tctgaagctttaagatgcatacaagttggtctttt 1091762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 28784674 - 28784767
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28784674 cttatggcttgattctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 28784767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 1107990 - 1108124
Alignment:
Q  234 tatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattcca 333  Q
    |||||||||  | |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |   ||||||||| |||| |    
T  1107990 tatataacagttgtttgtatttttgtaggcttggaggttgtggaaagaaggaaactcaaaagaattgattgaggattgtttcggggactcatacattcta 1108089  T
Q  334 tctgaagctttaagatgcatacaagttggtctttt 368  Q
    |||||||||||| | ||||||||||||||||||||    
T  1108090 tctgaagctttacgttgcatacaagttggtctttt 1108124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 48707678 - 48707585
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  48707678 cttatggcttgactctatatatttgtagtgtatgcttaaatttaacgtatcaaagtatctt--agcttttagtactttgttcacaaaatattgttg 48707585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 48023983 - 48023921
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaa 96  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  48023983 cttatggcttgactctatatatttgtagtgtatgcttcagtttaatgtataaaagtatcttaa 48023921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 5353506 - 5353449
Alignment:
Q  70 taagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  5353506 taagtttaatgtatcaaagtatctta--gcttttagtactttgttcacaaaacattgttg 5353449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 5354595 - 5354551
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5354595 cttatggcttggctctatatatttgtagtgtatgcttaagtttaa 5354551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 5353380 - 5353345
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  5353380 gagcttattgcttctgctgcctttgcaaaagctaac 5353345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 28784835 - 28784870
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  28784835 gagcttattgcttctgctgcctttgcaaaagctaac 28784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 44734313 - 44734406
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  44734313 cttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 44734406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 44732002 - 44732090
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacat 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  44732002 cttatggcttgactctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtacttttttcacaaaacat 44732090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 44732164 - 44732199
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  44732164 gagcttattgcttctgctgcctttgcaaaagctaac 44732199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 44734477 - 44734512
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  44734477 gagcttattgcttctgctgcctttgcaaaagctaac 44734512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 32798167 - 32798260
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  32798167 cttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 32798260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 32800479 - 32800572
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  32800479 cttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 32800572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 32798327 - 32798365
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaacggt 234  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  32798327 gagcttattgcttctgctgcctttgcaaaagctaacggt 32798365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 32800639 - 32800674
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  32800639 gagcttattgcttctgctgcctttgcaaaagctaac 32800674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 45336420 - 45336513
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  45336420 cttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 45336513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 45338732 - 45338825
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  45338732 cttatggcttggctctatatatttgtattgtatgcttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 45338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 1454088 - 1454149
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctta 95  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1454088 cttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagtatctta 1454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 14662493 - 14662553
Alignment:
Q  35 ttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctta 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14662493 ttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagtatctta 14662553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 17649032 - 17649125
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||  ||||||||| || | ||||||||||||||||||  || ||||  ||||||||||||||||||||||||    
T  17649032 cttatggcttggctctatatatttgttatgtatgcttcagctaaatgtatcaaagtatctt--agttttttttactttgttcacaaaacattgttg 17649125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 132826 - 132882
Alignment:
Q  33 acttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagt 89  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||    
T  132826 acttatggcttgcctctatatatttgtagtgtatgcttcagtttgatgtattaaagt 132882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 45336580 - 45336615
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  45336580 gagcttattgcttctgctgcctttgcaaaagctaac 45336615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 45338892 - 45338927
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  45338892 gagcttattgcttctgctgcctttgcaaaagctaac 45338927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 9535417 - 9535509
Alignment:
Q  35 ttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  9535417 ttatggcttgactctatatatttgtagtgtatgtttaagtttaatgtatcaaagtatctt--agcttttagtactttgttcacaaaacattgttg 9535509  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 1550317 - 1550411
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagc-ttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  1550317 cttatggcttggctctatatatttgtaatgtatgcttaagtttaatgtatcaaagtatctt--agctttttagtactttgttcacaaaacattgttg 1550411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 47695769 - 47695723
Alignment:
Q  50 atatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaa 96  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  47695769 atatatttgcagtgtatgctttagtttaatgtatcaaattatcttaa 47695723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 1550478 - 1550513
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  1550478 gagcttattgcttctgctgcctttgcaaaagctaac 1550513  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 22804771 - 22804864
Alignment:
Q  33 acttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgtt 128  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||    
T  22804771 acttatggcttggctctatatatttgtagtgtatgtttaagtttaatgtatcaaagtatcttaa--cttttagtacttttttcacaaaatattgtt 22804864  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 22804932 - 22804967
Alignment:
Q  196 gagcttattgattctgctgcctttgcaaaagctaac 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  22804932 gagcttattgcttctgctgcctttgcaaaagctaac 22804967  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 7230946 - 7230887
Alignment:
Q  35 ttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctta 95  Q
    ||||||||||||||||||| |||||  ||||||||| |  ||||||| |||||||||||||    
T  7230946 ttatggcttggctctatat-tttgttatgtatgctttaacttaatgtgtcaaagtatctta 7230887  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 13108808 - 13108714
Alignment:
Q  32 aacttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  13108808 aacttatggcttgactccatatatttgtagtgtatgcttcagtttaatgtatcaaagtatctt--agctttt-ttactttgttcacaaaacattgttg 13108714  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 13111099 - 13111006
Alignment:
Q  34 cttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatcttaaagcttttagtactttgttcacaaaacattgttg 129  Q
    ||||||||||||||| ||||||||||| | ||||||| |||||||||||||||| ||| ||  || ||||| |||||||||||||||| |||||||    
T  13111099 cttatggcttggctcaatatatttgtattttatgcttcagtttaatgtatcaaaatatttt--agtttttattactttgttcacaaaatattgttg 13111006  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 6723624 - 6723687
Alignment:
Q  32 aacttatggcttggctctatatatttgtagtgtatgcttaagtttaatgtatcaaagtatctta 95  Q
    |||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||||||    
T  6723624 aacttatgacttggctctatatatttatagtgtatgatttagtttaatgtatcaaaatatctta 6723687  T

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