View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15180_high_2 (Length: 420)
Name: NF15180_high_2
Description: NF15180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15180_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 43019503 - 43019908
Alignment:
| Q |
1 |
tatctacaaacctacctattcaacaaaagttaagtgaaatttgcagtttgcttcctaaatccacagaaaaaccaactttaaatttctacaagctgcttgc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43019503 |
tatcttcaaacctacctattcaacaaaagttaagtgaaatttgaagtttccttcctaaatccacagaaaaaccaactttaaatttctacaagcttcttgc |
43019602 |
T |
|
| Q |
101 |
aactaagaaaggtattaaagaataatta--gtggtataacttggaaaactggaagtcggacttggaaaaatagccaaagtactggtaataagtctatgtt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
43019603 |
aactaagaaaggtattaaagaataattacagagctataacttggaaaactggaagtcagacttggaaaaatagccaaagtacttgtaataagtttatgtt |
43019702 |
T |
|
| Q |
199 |
gcttgctcccatgtcccaactcctaaggattccaatattgcaaatagaaaagttaccagttttgtatggatacaattaaaatgtaaagaaaaaatgtcta |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019703 |
gcttgctcccatgtcccaactcctaaggattccaatattgcgaatagaaaagttaccagttttgtatggatacaattaaaatgtaaagaaaaaatgtcta |
43019802 |
T |
|
| Q |
299 |
agactacgctataatatttattcacccaaaagacagctatattaaaaactaaaattcatagaaagccaaatcgcaaatctagaaaaggaacagtaaatca |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019803 |
agactacactataatatttattcacccaaaagacagctatattaaaaactaaaattcatagaaagccaaatcgcaaatctagaaaaggaacagtaaatca |
43019902 |
T |
|
| Q |
399 |
tttaag |
404 |
Q |
| |
|
|||||| |
|
|
| T |
43019903 |
tttaag |
43019908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University