View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15181_high_2 (Length: 336)

Name: NF15181_high_2
Description: NF15181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15181_high_2
NF15181_high_2
[»] chr1 (2 HSPs)
chr1 (5-324)||(9581516-9581835)
chr1 (8-325)||(9587086-9587403)
[»] chr7 (3 HSPs)
chr7 (86-209)||(10615654-10615777)
chr7 (84-213)||(10169040-10169169)
chr7 (84-213)||(10176565-10176694)
[»] chr4 (11 HSPs)
chr4 (97-213)||(1755490-1755606)
chr4 (37-142)||(553767-553872)
chr4 (258-320)||(532653-532715)
chr4 (104-153)||(3437630-3437679)
chr4 (46-154)||(661854-661962)
chr4 (84-152)||(2547289-2547357)
chr4 (103-155)||(55907684-55907736)
chr4 (32-71)||(1481722-1481761)
chr4 (38-72)||(53760237-53760271)
chr4 (101-150)||(571330-571379)
chr4 (96-148)||(5106558-5106610)
[»] chr6 (8 HSPs)
chr6 (95-222)||(6417020-6417147)
chr6 (86-155)||(7132300-7132369)
chr6 (86-154)||(7135224-7135292)
chr6 (86-154)||(7138147-7138215)
chr6 (48-155)||(8913374-8913481)
chr6 (167-213)||(9412061-9412107)
chr6 (95-148)||(6423907-6423960)
chr6 (257-325)||(9411955-9412023)
[»] chr3 (2 HSPs)
chr3 (38-155)||(51763334-51763451)
chr3 (86-222)||(13469641-13469777)
[»] chr2 (1 HSPs)
chr2 (103-155)||(1036620-1036672)
[»] chr8 (3 HSPs)
chr8 (39-225)||(32151893-32152079)
chr8 (49-153)||(14004140-14004244)
chr8 (32-72)||(17642873-17642913)
[»] chr5 (1 HSPs)
chr5 (43-148)||(41900443-41900548)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 9581835 - 9581516
Alignment:
Q  5 gtaacctcaacgagcttttgtctcaagtctcatgtttcccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcg 104  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||  ||||  ||||    
T  9581835 gtaacctcaacgagcttctgtatcaagtctcttgtttcccattgaaactcacatcgctcaatctctcccaccaatcctacattcctgctgatggactgcg 9581736  T
Q  105 agctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcctcattgccgaatgtttccct 204  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||  |||| |||||||||||||||||||||||||||||||||| |||    
T  9581735 agctttctccgtaaagattacaacgttgacatctctcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcct 9581636  T
Q  205 ttacttgaaatacttgacctcaatgaccctttactttgtatcgacggttgcaatagctttctccatggggtagagactctttcgttagcacttttcagac 304  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||||    
T  9581635 ttacttgaaatacttgacctcaatggccctttattttgtatcgacggttgcaatagcattctccatggggtagagactctttcattagcattttccagac 9581536  T
Q  305 tccgcaaaattaatctctct 324  Q
    ||||||||||||||||||||    
T  9581535 tccgcaaaattaatctctct 9581516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 9587403 - 9587086
Alignment:
Q  8 acctcaacgagcttttgtctcaagtctcatgtttcccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagc 107  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| | ||| | | |||||| |||  ||||||||  ||    
T  9587403 acctcaacgagcttctatctcaagtctcttgtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgc 9587304  T
Q  108 tttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcctcattgccgaatgtttcccttta 207  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  9587303 tttctccttaaagattacaacgttgacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttta 9587204  T
Q  208 cttgaaatacttgacctcaatgaccctttactttgtatcgacggttgcaatagctttctccatggggtagagactctttcgttagcacttttcagactcc 307  Q
    ||||||||||||||||| | |||||||||| |||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9587203 cttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactcc 9587104  T
Q  308 gcaaaattaatctctctg 325  Q
    ||||||||||||||||||    
T  9587103 gcaaaattaatctctctg 9587086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 10615777 - 10615654
Alignment:
Q  86 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcct 185  Q
    |||| ||| ||||||| ||||||||||||  |||||||||||||||||| ||||||| ||||||| |||||  | | ||| |||||| |||  |||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagtagtgatctgttcct 10615678  T
Q  186 cattgccgaatgtttccctttact 209  Q
     ||||| |||||||||||||||||    
T  10615677 tattgcagaatgtttccctttact 10615654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 10169040 - 10169169
Alignment:
Q  84 cattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttc 183  Q
    |||||| ||| |||||||||||| ||||||   ||| |||| ||||||||| ||||||| ||||||| ||||   ||||||  ||| || |||||||||     
T  10169040 cattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgatgattttaatactactgacttgttt 10169139  T
Q  184 ctcattgccgaatgtttccctttacttgaa 213  Q
    || || || |||||||| ||||| ||||||    
T  10169140 cttatcgcagaatgttttcctttgcttgaa 10169169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 10176565 - 10176694
Alignment:
Q  84 cattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttc 183  Q
    |||||| ||| |||||||||||| ||||||   ||| |||| ||||||||| ||||||| ||||||| ||||   ||||||  ||| || |||||||||     
T  10176565 cattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacattgatgattttaatactactgacttgttt 10176664  T
Q  184 ctcattgccgaatgtttccctttacttgaa 213  Q
    || || || |||||||| ||||| ||||||    
T  10176665 cttatcgcagaatgttttcctttgcttgaa 10176694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 1755606 - 1755490
Alignment:
Q  97 gggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcctcattgccgaat 196  Q
    ||||||| |||||||||   |||||||||||||||||| |||||||  ||||||||||||  | || || |||  |||||||| ||||||||||| || |    
T  1755606 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgact 1755507  T
Q  197 gtttccctttacttgaa 213  Q
    |||||||||| ||||||    
T  1755506 gtttccctttgcttgaa 1755490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 553872 - 553767
Alignment:
Q  37 tgtttcccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacat 136  Q
    ||||| |||||||| |||||||| ||| |||||||||   || |   |||||| ||| ||||||||||||||||||||  ||| |||||||||||||| |    
T  553872 tgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacct 553773  T
Q  137 ctctca 142  Q
    ||||||    
T  553772 ctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 532715 - 532653
Alignment:
Q  258 tagctttctccatggggtagagactctttcgttagcacttttcagactccgcaaaattaatct 320  Q
    ||||||||||||||| || ||||||||||| ||| ||||||||| |||||||||  |||||||    
T  532715 tagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatct 532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 3437630 - 3437679
Alignment:
Q  104 gagctttctccttaaagattacaactttgacatctctcatttgttccaac 153  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaac 3437679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 661962 - 661854
Alignment:
Q  46 ttgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcattt 145  Q
    |||||| |||| || ||||||||||||  ||||||   |||||| ||  |||| |||||||||||||||  | | ||||||||||| || ||||||||||    
T  661962 ttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcattt 661863  T
Q  146 gttccaaca 154  Q
    ||| |||||    
T  661862 gttacaaca 661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 2547357 - 2547289
Alignment:
Q  84 cattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaa 152  Q
    |||||||||| |||||||||||||||| ||   |||||| | || |||||| |||||||||||||||||    
T  2547357 cattcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaa 2547289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 55907684 - 55907736
Alignment:
Q  103 cgagctttctccttaaagattacaactttgacatctctcatttgttccaacat 155  Q
    ||||||||||||  ||| |||||||||||||  ||||||||||||||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaacat 55907736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 1481761 - 1481722
Alignment:
Q  32 tctcatgtttcccattgaaactcacatcgctcaatctctc 71  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481761 tctcctgtttcccattgaaactcacatcgctcaatatctc 1481722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 53760237 - 53760271
Alignment:
Q  38 gtttcccattgaaactcacatcgctcaatctctcc 72  Q
    |||||||||||||||||||||| ||||||||||||    
T  53760237 gtttcccattgaaactcacatcactcaatctctcc 53760271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  101 tgcgagctttctccttaaagattacaactttgacatctctcatttgttcc 150  Q
    ||||||| ||||||  ||| |||||||||||||||||||||| |||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 5106558 - 5106610
Alignment:
Q  96 tgggttgcgagctttctccttaaagattacaactttgacatctctcatttgtt 148  Q
    ||||||||||||||||||| ||||||| | || |||||||||| ||| |||||    
T  5106558 tgggttgcgagctttctccctaaagatgaaaaatttgacatctatcacttgtt 5106610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 6417147 - 6417020
Alignment:
Q  95 atgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcctcattgccga 194  Q
    ||||||| ||||||||||||  ||||| |||||||||||| ||||||| ||||||| |||||  | ||||| |  ||| |||  ||||||| ||||| ||    
T  6417147 atgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacatcgttaatttcaacggtagtgatctgttccttattgcaga 6417048  T
Q  195 atgtttccctttacttgaaatacttgac 222  Q
    |||||||||||| ||||||  |||||||    
T  6417047 atgtttccctttgcttgaagaacttgac 6417020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 7132369 - 7132300
Alignment:
Q  86 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacat 155  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||  ||||||||||||    
T  7132369 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacat 7132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 7135292 - 7135224
Alignment:
Q  86 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaaca 154  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||  |||||||||||    
T  7135292 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 7138215 - 7138147
Alignment:
Q  86 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaaca 154  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||  |||||||||||    
T  7138215 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 8913374 - 8913481
Alignment:
Q  48 gaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgt 147  Q
    ||||||||||||||||||| |||||  ||||     | |||||||  ||||||||| || ||| ||   |||||||||||||||||| ||||||| ||||    
T  8913374 gaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgt 8913473  T
Q  148 tccaacat 155  Q
    ||||||||    
T  8913474 tccaacat 8913481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 9412107 - 9412061
Alignment:
Q  167 atagtaatgacttgttcctcattgccgaatgtttccctttacttgaa 213  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||    
T  9412107 atagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 9412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 6423960 - 6423907
Alignment:
Q  95 atgggttgcgagctttctccttaaagattacaactttgacatctctcatttgtt 148  Q
    ||||||||||||||||||||  ||| || ||||||||||| ||||||| |||||    
T  6423960 atgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 9412023 - 9411955
Alignment:
Q  257 atagctttctccatggggtagagactctttcgttagcacttttcagactccgcaaaattaatctctctg 325  Q
    ||||||||||  || |||||||||||||||| ||  ||||||||| ||||  ||| |||||||||||||    
T  9412023 atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctg 9411955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 51763334 - 51763451
Alignment:
Q  38 gtttcccattgaaactcacatcgctcaatctctcccgccaaacttacatt-cctgcacatgggttgcgagctttctccttaaagattacaactttgacat 136  Q
    |||||||||||||||||||||| || |||||||||   ||  ||||| || ||| || |||||||||||| ||| ||   ||||||||||||||||||||    
T  51763334 gtttcccattgaaactcacatcacttaatctctccaaacag-cttacctttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacat 51763432  T
Q  137 ctctcatttgttccaacat 155  Q
    |||||| ||||||| ||||    
T  51763433 ctctcacttgttcccacat 51763451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 13469641 - 13469777
Alignment:
Q  86 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttccaacatctgtgatttctatagtaatgacttgttcct 185  Q
    |||||||| ||||||| ||||||||||||  ||||| ||||||  |||| ||||||| ||||||| ||||   | ||||| |||| | |||| |||||||    
T  13469641 ttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgctaatttcaatagcagtgacctgttcct 13469740  T
Q  186 cattgccgaatgtttccctttacttgaaatacttgac 222  Q
     ||||| |||||||| || || ||||||  |||||||    
T  13469741 tattgcagaatgttttccgttgcttgaagaacttgac 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 1036620 - 1036672
Alignment:
Q  103 cgagctttctccttaaagattacaactttgacatctctcatttgttccaacat 155  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||||||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 1036672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 32152079 - 32151893
Alignment:
Q  39 tttcccattgaaactcacatcgctcaatctctcccgccaaacttac-attcctgcacatgggttgcgagctttctccttaaagattacaactttgacatc 137  Q
    |||||| ||||| |||||||| ||||||||||||  | |||||||| || ||||   ||||| | | ||||||||||  ||| |||||||||||||| ||    
T  32152079 tttcccgttgaacctcacatcactcaatctctccaac-aaacttaccatacctgtgaatgggatacaagctttctcccaaaacattacaactttgacctc 32151981  T
Q  138 tctcatttgttccaacatctgtgatttctatagtaatgacttgttcctcattgccgaatgtttccctttacttgaaatacttgacctc 225  Q
    ||||| ||||||    || | |  |||| || | |  |||||||||||||||||||| ||||||||||| || |||  ||||||||||    
T  32151980 tctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccctttgctcgaagaacttgacctc 32151893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 14004244 - 14004140
Alignment:
Q  49 aaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgtt 148  Q
    |||||||||||||||||||| |||  |||| |   | |||||||  |||| ||||||||||||||    || |||||||||||||| || || |||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgtt 14004145  T
Q  149 ccaac 153  Q
    |||||    
T  14004144 ccaac 14004140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 17642873 - 17642913
Alignment:
Q  32 tctcatgtttcccattgaaactcacatcgctcaatctctcc 72  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  17642873 tctcttgttttccattgaaactcacatcactcaatctctcc 17642913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 41900443 - 41900548
Alignment:
Q  43 ccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctca 142  Q
    ||||||||||||||||| ||||| |||||   |||||    ||| || |||  |||||| |||||||| |||  |||||||||||||||||| |||||||    
T  41900443 ccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctca 41900542  T
Q  143 tttgtt 148  Q
     |||||    
T  41900543 cttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University