View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15181_high_3 (Length: 329)
Name: NF15181_high_3
Description: NF15181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15181_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 30888386 - 30888705
Alignment:
| Q |
8 |
cgaagaatatgaaacaagttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagcta |
107 |
Q |
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| T |
30888386 |
cgaacaatatgaaacaagttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagcta |
30888485 |
T |
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| Q |
108 |
actaatagttctaagtgttttgtttgagaacatatatacaagtaatctaaagtatattcttggtttggttaatttttctatgttattaaccaagaacaat |
207 |
Q |
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| T |
30888486 |
actaatagttctaagtgttttgtttgagaacatatatacaagtaatctaaagtatgttcttggtttggttaatttttctatgttattagccaagaacaat |
30888585 |
T |
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| Q |
208 |
catgagggaaattgttatgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgtgcgcgctcatgt |
307 |
Q |
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| T |
30888586 |
catgagggaaattgttatgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgt--gcgctcgtgt |
30888683 |
T |
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| Q |
308 |
atattttattatgacatctctt |
329 |
Q |
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| T |
30888684 |
gtattttattatggcatctctt |
30888705 |
T |
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