View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15181_high_5 (Length: 301)
Name: NF15181_high_5
Description: NF15181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15181_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 45218177 - 45217884
Alignment:
| Q |
1 |
ttttgacagtgaggctgggatactcatttgtgtttcggtatcagcaggaaagcttgctacctgttgttgtttttcaggcatgtgtgcggtgcggcctgga |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
45218177 |
ttttgacagtgaggttgggatactcatttgtgtttcggtatcagcaagaaagcttgctgcctgctgttgtttttcaggcatgtgtgcggtgcggcctgga |
45218078 |
T |
|
| Q |
101 |
ttgaacttgtgttgggctgttttg----------gtttcggttgtgttgctgctgcaagcctgcaagtggtttcctttggacagaactgcagcgtgtgca |
190 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45218077 |
ttgaacttgtgttgggctgttttgtgttgttttggtttcagttgtgttgctgctgcaagcctgcaagtggtttcctttggacagaactgcagcgcgtgca |
45217978 |
T |
|
| Q |
191 |
aatatgttac-tttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttccaaaatttatttgcatcattcaccatat |
283 |
Q |
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| T |
45217977 |
aatatgttacttttcatgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttccaaaatttatctgcatcattcactatat |
45217884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 37166428 - 37166376
Alignment:
| Q |
204 |
cacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttcc |
256 |
Q |
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| T |
37166428 |
cacgcgttcgtgaaaattcttagggaaaacatccgtacaaaatagcattttcc |
37166376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3579087 - 3579352
Alignment:
| Q |
1 |
ttttgacagtgaggctgggatactcatttgtgtttcggtatcagcaggaaagcttgctacctgttgttgtttttcaggcatgtgtgcggtgcggcctgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||||||||||||||||||||||| |
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| T |
3579087 |
ttttgacagtgaggctgggatactcatttgtgtttcggtatcagcaagaaagtttgctgcctgctgttgtttttcaagcatgtgtgcggtgcggcctgga |
3579186 |
T |
|
| Q |
101 |
ttgaacttgtgttgggctgtt----------ttggtttcggttgtgttgctgctgcaagcctgcaagtggtttcctttggacagaactgcagcgtgtgca |
190 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3579187 |
ttgaacttgtgttgggctgttttgtgttgttttggtttcggatgtgttgctgctgcaagcctgcaagtggtttcctttggacagaactgcagcgcgtgca |
3579286 |
T |
|
| Q |
191 |
aatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttcc |
256 |
Q |
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| T |
3579287 |
aatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttcc |
3579352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3565322 - 3565599
Alignment:
| Q |
1 |
ttttgacagtgaggctgggatactcatttgtgtttcggtatcagcaggaaagcttgctacctgttgttgtttttcaggcatgtgtgcggtgcggcctgga |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
3565322 |
ttttgacagtgaggttgggatactcatttgtgtttcgatatcagcaagaaagcttgctgcctgctgttgtttttcaggcatgtgtgcgg-----cctgga |
3565416 |
T |
|
| Q |
101 |
ttgaacttgtgttgggctgtt---------------------ttggtttcggttgtgttgctgctgcaagcctgcaagtggtttcctttggacagaactg |
179 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3565417 |
ttgaacttgtgttgggctgttttgtgttagttgtgtgttgttttggtttcggctgtgttgctgttgcaagcctgcaagtggtttcctttggacagaactg |
3565516 |
T |
|
| Q |
180 |
cagcgtgtgcaaatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttccaaaatt |
262 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3565517 |
cagcgcgtgcaaatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttccataatt |
3565599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 10971229 - 10971141
Alignment:
| Q |
166 |
tttggacagaactgcagcgtgtgcaaatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcatttt |
254 |
Q |
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| T |
10971229 |
tttggacagaactgtagcacgtgcaaatatgatgattacacgcgtccgtgaaaattcttgcccaatacatccgtacaaaatagcatttt |
10971141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 10972554 - 10972637
Alignment:
| Q |
171 |
acagaactgcagcgtgtgcaaatatgttactttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcatttt |
254 |
Q |
| |
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||||||||| ||| ||||||||||| | || ||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
10972554 |
acagaactgtagcacgtgcaaatatgatgattacacgcgtccgtgaaaattcttgcccaatacatccgtacaaaatagcatttt |
10972637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 40166761 - 40166704
Alignment:
| Q |
175 |
aactgcagcgtgtgcaaatatgttactttcacgcgtccgtgaaaattcttgcgcaata |
232 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||||| ||||||| |
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| T |
40166761 |
aactgcagcgcgtgcaaatataatgttttcacgcgtccgtgaaaattcttacgcaata |
40166704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 413348 - 413289
Alignment:
| Q |
201 |
tttcacgcgtccgtgaaaattcttgcgcaatacgtccgtacaaaatagcattttccaaaa |
260 |
Q |
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|||||||| |||||| |||||||| ||| || |||||||||||||||||||||||||| |
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| T |
413348 |
tttcacgctcccgtgagtattcttgcacaacacttccgtacaaaatagcattttccaaaa |
413289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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