View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15181_low_1 (Length: 508)
Name: NF15181_low_1
Description: NF15181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15181_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 21569568 - 21569863
Alignment:
| Q |
18 |
aactttcccctgcttttggtaaagattcagataagcttcggtatgtttttcaaactacaacactatctttttcattctaaaacaaaaatgatgttttttc |
117 |
Q |
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| T |
21569568 |
aactttcccctgcttttggtaaagattcagataagcttcggtatgtttttcaaactataacactatctttttcattccaaaacaaaaatgatgttttttc |
21569667 |
T |
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| Q |
118 |
tttgtggtggtccgggtttaaaccctagacgtattgttcctgtcaactgagctaagctcatgaggataaagaaaaatgatgttataaaagtgtt---agt |
214 |
Q |
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| T |
21569668 |
tttgtggtggttggggttcaaatcccaaatgtattttttctgccaactaagctaagctcacgaggacaaagaaaaatgatgttataaaagtgtttgaagt |
21569767 |
T |
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| Q |
215 |
tatggttatgatttgaaacttgatattttatattatggagaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac |
310 |
Q |
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| T |
21569768 |
tatttttatgatttcaagcttgatattttatattgtggaaaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac |
21569863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 21569905 - 21570049
Alignment:
| Q |
349 |
aatggttcacatattatattagttgannnnnnnatgaaattttgttatctaaggtcataaaa-atggtttattagaaagaattgcaccagatgannnnnn |
447 |
Q |
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| T |
21569905 |
aatggttcacatattatattagttgatttttt-atgaaattttgttatctaaggtcataaaaaatggtttattagaaagaattgcaacagatgatttttt |
21570003 |
T |
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| Q |
448 |
nnnnnnnnnnnaaatatataagcaaaataattgtaattaaggagag |
493 |
Q |
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| T |
21570004 |
gtttagtttttaaatatataagcaaaataattgtaattaaggagag |
21570049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 41916592 - 41916629
Alignment:
| Q |
150 |
attgttcctgtcaactgagctaagctcatgaggataaa |
187 |
Q |
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| T |
41916592 |
attgtccctatcaactgagctaagctcatgaggataaa |
41916629 |
T |
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