View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_103 (Length: 212)
Name: NF15182_high_103
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_103 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 10895590 - 10895408
Alignment:
| Q |
12 |
ataatactcctgaggtaattttaatattactatgattctaaccatttataaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattca |
111 |
Q |
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| T |
10895590 |
ataatacccctgaggtaattttaatattactatcattctaaccatttataaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattca |
10895491 |
T |
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| Q |
112 |
cgtcccttgaggagggaaactaacatattctatccttagaaatacatagtgcaatggatttcatagaagttataccaataagg |
194 |
Q |
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| T |
10895490 |
cgtcccttgaggagagaatctctcatattctatcctcaaaaatacatagtgcaatggatttcatagaagctataccaataagg |
10895408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23714268 - 23714400
Alignment:
| Q |
61 |
aaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattcacgtcccttgaggagggaaactaacatattctatccttagaaatacatag |
160 |
Q |
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| T |
23714268 |
aaaaaaaaaaatgaaaaatataaccaaactgtatcacttctggttcattcacgtcccttgaggagagaatctctcatattctatcctcaaaaatacatag |
23714367 |
T |
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| Q |
161 |
tgcaatggatttcatagaagttataccaataagg |
194 |
Q |
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| T |
23714368 |
tgcaatgga-ttcatagaagctataccaataagg |
23714400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23732724 - 23732856
Alignment:
| Q |
61 |
aaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattcacgtcccttgaggagggaaactaacatattctatccttagaaatacatag |
160 |
Q |
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| T |
23732724 |
aaaaaaaaaaatgaaaaatataaccaaactgtatcacttctggttcattcacgtcccttgaggagagaatctctcatattctatcctcaaaaatacatag |
23732823 |
T |
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| Q |
161 |
tgcaatggatttcatagaagttataccaataagg |
194 |
Q |
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||||||||| |||||||||| ||||||||||||| |
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| T |
23732824 |
tgcaatgga-ttcatagaagctataccaataagg |
23732856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23751179 - 23751311
Alignment:
| Q |
61 |
aaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattcacgtcccttgaggagggaaactaacatattctatccttagaaatacatag |
160 |
Q |
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||||| |||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| |
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| T |
23751179 |
aaaaaaaaaaatgaaaaatataaccaaactgtatcacttctggttcattcacgtcccttgaggagagaatctctcatattctatcctcaaaaatacatag |
23751278 |
T |
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| Q |
161 |
tgcaatggatttcatagaagttataccaataagg |
194 |
Q |
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||||||||| |||||||||| ||||||||||||| |
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| T |
23751279 |
tgcaatgga-ttcatagaagctataccaataagg |
23751311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23695835 - 23695967
Alignment:
| Q |
61 |
aaaaagaaaaatgaaatatataaccaaattatatgacttctggttcattcacgtcccttgaggagggaaactaacatattctatccttagaaatacatag |
160 |
Q |
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||||| |||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| |
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| T |
23695835 |
aaaaaaaaaaatgaaaaatataaccaaactgtatcacttctggttcattcacgtcccttgaggagagaatctctcatattctatcctcaaaaatacatag |
23695934 |
T |
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| Q |
161 |
tgcaatggatttcatagaagttataccaataagg |
194 |
Q |
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| ||||||| |||||||||| ||||||||||||| |
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| T |
23695935 |
tacaatgga-ttcatagaagctataccaataagg |
23695967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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