View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_18 (Length: 512)
Name: NF15182_high_18
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 10355750 - 10355229
Alignment:
| Q |
1 |
ttacatgtg-tatgtattgattgtgtcattaattagaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtgatgcgttt |
99 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10355750 |
ttacatgtggtatgtattgattgtatcattaattagaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtgatgcgttt |
10355651 |
T |
|
| Q |
100 |
gtgataacnnnnnnnnngtgtgttaaatagtactactcgataaggtgaacactcaggtgctctagagttgttgaggaaaatcatgaagacgacttcaagt |
199 |
Q |
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||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10355650 |
gtgatgactttttttt-gtgtgttaaatagtaatacttgataaggtgaacactcaggtgctctagagttgttgaggaaaatcatgaagacgacttcaagt |
10355552 |
T |
|
| Q |
200 |
ttgcttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattgtttggttggttannnnnnnn-acagaaagttggttggtt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10355551 |
ttgcttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattgtttggttggttatttttttttacagaaagttggttggtt |
10355452 |
T |
|
| Q |
299 |
atttagataatagaataatgccacatatcgtaatggtttgc----------tgctgtcaaaatcttttaaatgaataccagctacaacatagatagaatc |
388 |
Q |
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|||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10355451 |
atttaggtaatggaataatgccacatctcgtaatggtttgcaatggtttgctgctgtcaaaatcttttaaatgaataccagctacaacatagaaagaatc |
10355352 |
T |
|
| Q |
389 |
cattggaatcaaaatattttccctgcactgtaaactagaactattttgatcttttaaatggttataaagtttctggcacgattattttttgaagtgaggt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10355351 |
cattggaatcaaaatattttccctgcactgtaaactagaactattttgatcttttaaatggttataaagtttctggcacgattattttttgaagtgaggt |
10355252 |
T |
|
| Q |
489 |
cttgatttagtgaagtattatat |
511 |
Q |
| |
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|||||||||||||| ||| |||| |
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| T |
10355251 |
cttgatttagtgaaatataatat |
10355229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 10351092 - 10350986
Alignment:
| Q |
165 |
agttgttgaggaaaatcatgaagacgacttcaagtttgcttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattgtttg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||||||| ||| |
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| T |
10351092 |
agttgttgaggaaaatcatgaagacgacttcaagtttccttagaagtttgttaaaaagataattaaatcttgaaatatcttttactaaaataattg-ttg |
10350994 |
T |
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| Q |
265 |
gttggtta |
272 |
Q |
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|||||||| |
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| T |
10350993 |
gttggtta |
10350986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 10352189 - 10352105
Alignment:
| Q |
10 |
tatgtattgattgtgtcattaattagaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtgatg |
94 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||||| |
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| T |
10352189 |
tatgttttgattgtatcattaattagaaacttatgtgtattctaccaaatattgtattttgattggtgagtttttaatcgtgatg |
10352105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 10335382 - 10335299
Alignment:
| Q |
9 |
gtatgtattgattgtgtcattaattagaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtga |
92 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||| || ||||| ||||||||||||||||||| || ||| ||||| |
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| T |
10335382 |
gtatgtattgattgtatcattaattagaaacttacatgtattataccaaaggttgtattttgattggtgagtttctaatcgtga |
10335299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 10350915 - 10350854
Alignment:
| Q |
375 |
acatagatagaatccattggaatcaaaatattttccctgcactgtaaactagaactattttg |
436 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |
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| T |
10350915 |
acatagaaagaatccattggaaacaaaatattttccctgcattgtaaactagaacaattttg |
10350854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 10350997 - 10350949
Alignment:
| Q |
288 |
gttggttggttatttagataatagaataatgccacatatcgtaatggtt |
336 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
10350997 |
gttggttggttatttaggtaatggaataatgccacacatcgtaatggtt |
10350949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 10352088 - 10352000
Alignment:
| Q |
11 |
atgtattgattgtgtcattaattagaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtgatgcgttt |
99 |
Q |
| |
|
|||| |||||||| ||| || |||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
10352088 |
atgttttgattgtatcactacttagaaacttgcgtgtattccgccaaacattatattttgattgatgagattttaaacgtgatgtgttt |
10352000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 10335223 - 10335185
Alignment:
| Q |
66 |
ttttgattggtgagattttaaacgtgatgcgtttgtgat |
104 |
Q |
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| T |
10335223 |
ttttgattggtgagattttaaacgtgatgtgtttgtgat |
10335185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 10335682 - 10335616
Alignment:
| Q |
9 |
gtatgtattgattgtgtcattaattagaaacttatgtgtattctatcaaagattgtattttgattgg |
75 |
Q |
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|||||| |||||||| |||||| |||||||||| |||||||| | | ||| ||||||||||| |||| |
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| T |
10335682 |
gtatgttttgattgtatcattacttagaaacttgtgtgtattgtgtgaaacattgtattttggttgg |
10335616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 10180063 - 10180007
Alignment:
| Q |
36 |
aaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtga |
92 |
Q |
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||||||| |||||||||| ||||||||||||||||| | |||| |||||| ||||| |
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| T |
10180063 |
aaacttacgtgtattctactaaagattgtattttgatggatgagtttttaatcgtga |
10180007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 10180165 - 10180101
Alignment:
| Q |
34 |
agaaacttatgtgtattctatcaaagattgtattttgattggtgagattttaaacgtgatgcgtt |
98 |
Q |
| |
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|||||||| |||||||||| |||| |||| | ||||||||||||| |||||| | ||||||||| |
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| T |
10180165 |
agaaacttgtgtgtattctgccaaacattgaagtttgattggtgagtttttaatcatgatgcgtt |
10180101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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