View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_20 (Length: 496)
Name: NF15182_high_20
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 14884202 - 14883746
Alignment:
| Q |
19 |
cttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaacaacactgattactgtacttggagaggtatttcat |
118 |
Q |
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| T |
14884202 |
cttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaacaacactgattactgtacttggagaggtatttcat |
14884103 |
T |
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| Q |
119 |
gtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttcaccttctatcggtcttttacaaaacctaactca |
218 |
Q |
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| T |
14884102 |
gtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttcaccttttatcggtcttttacaaaacctaactca |
14884003 |
T |
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| Q |
219 |
ccttgatctttcatcaaaccatattgtgggtcccattccaccttctctctccaaacttactaaactagaatctttgcttttgttctccaaccaactgacg |
318 |
Q |
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| T |
14884002 |
ccttgatctttcatcaaaccatattgtgggtcccattccaccttctctctccaaacttactaaactagaatctttgcttttgttctccaaccaacttacg |
14883903 |
T |
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| Q |
319 |
agtcaaattcctgttgagtttggctcgttggtgaatctccgatttttgcgactcggtgataatcaactcagtggtgaaattccctcttcattaggcaatc |
418 |
Q |
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| T |
14883902 |
agtcaaattcccgctgattttggctcgttagtgaatctccgatttttgcgactcggtgataatcaactcagtggtgaaattccctcttcattaggcaatc |
14883803 |
T |
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| Q |
419 |
ttgctaaacttgtcacccttgggttagcttcatgcaaactcaacggttcgatcccga |
475 |
Q |
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| T |
14883802 |
ttgttaaacttgtcacccttgggttagcttcatgcaaactcaacggttcgatcccga |
14883746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 14870012 - 14869841
Alignment:
| Q |
19 |
cttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaacaacactgattactgtacttggagaggtatttcat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14870012 |
cttttggaggtgaaatcatcttttacagaagaccctgaaaatgttcttagtacttggtctgaaaacaacaccgattactgtacttggagaggtatttcat |
14869913 |
T |
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| Q |
119 |
gtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttcacctt |
190 |
Q |
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| T |
14869912 |
gtgactcggtgagtcgtgacatagttagactcgttttgtctaactcaaaactcactgggtcaatttcacctt |
14869841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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