View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_21 (Length: 489)
Name: NF15182_high_21
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 48309327 - 48309783
Alignment:
| Q |
16 |
caaaaagaaggcatttgaccacagggcttccacatccctgtttacccacaatgcttcaagtcgctcttgctgtggtagcctcctatcctaccatgtataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48309327 |
caaaaagaaggcatttgaccacagggcttccacatccctgtttacccacaatgcttcaagccgctcttgctgtggtagcctcctatcctaccatgtataa |
48309426 |
T |
|
| Q |
116 |
acaaacaaaacaacctctctattgctcactcctttccgcaatcctccagcttccattcactcacaatgctttcaaaagctgcccttactgttgcagcttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48309427 |
acaaacaaaacaacctctctattgctcactcctttccgcaatcctccagcttccattcactcacaatgctttcaaaagctgcccttactgttgtagcttc |
48309526 |
T |
|
| Q |
216 |
ccatcctaccaacaaagaaccacaccattgttcactcccttcggcaatcctccagtcaacactgaaaggccagagatccagtttactcacgaagccctgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48309527 |
ccatcctaccaacaaagaaccacaccattgttcactcccttcggcaatcctccagtcaacactgaaaggccaaagatccagtttactcacgaagccctgc |
48309626 |
T |
|
| Q |
316 |
tgcacaaacttggtcatacactgctgcactggatgatcttgtccctcccaacatttttattcattgacagcacaaacctggccctgttagatgcttgccc |
415 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48309627 |
tgcacaaacttgttcatacactgctgcactggatgatcttgtccctcccaacatttttattcattgacagcacaaacctggccctgttagatgcttgccc |
48309726 |
T |
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| Q |
416 |
tctactgtgttaataaggggctgtcttctttgtgcgaaaagaaccatcccatctctg |
472 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
48309727 |
tctactgtgttaataagggactgtcttctttgtgcgaaaagaaccattccatctctg |
48309783 |
T |
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