View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_high_22 (Length: 486)
Name: NF15182_high_22
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 39751734 - 39751272
Alignment:
| Q |
16 |
tgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751734 |
tgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgt |
39751635 |
T |
|
| Q |
116 |
gacagaaaatccacaaggaaccccaacctgttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751634 |
gacagaaaatccacaaggaaccccaacctgttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatgg |
39751535 |
T |
|
| Q |
216 |
ctatagacatagttattagttagtacaagaagataattttcacctgaataatccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751534 |
ctatagacatagttattagttagtacaagaagataattttcacctgaatagtccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatg |
39751435 |
T |
|
| Q |
316 |
agctttgtataaccaattggatcagtagaagggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctattt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751434 |
agctttgtataaccaattggatcagtagaagggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctattt |
39751335 |
T |
|
| Q |
416 |
ctcttgatgttcccattacagcgtatataagcggtggtacaacactcgtatctatttcatttc |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39751334 |
ctcttgatgttcccattacagcgtatataagcggtggtacaacactcgtatctatttcatttc |
39751272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 33270319 - 33270399
Alignment:
| Q |
65 |
agaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg |
145 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||||| |||| |||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
33270319 |
agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
33270399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 25707108 - 25707238
Alignment:
| Q |
16 |
tgttttggttgtaaaatgtgtaattccaaacagtccctttaactgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgt |
115 |
Q |
| |
|
||||||||| || || || ||||| || || || ||||| | ||| ||||||||||| | || || |||||||| | |||||||| | |||||||||| |
|
|
| T |
25707108 |
tgttttggtggtgaagtgagtaatccccaaaagacccttgagctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcatgt |
25707207 |
T |
|
| Q |
116 |
gacagaaaatccacaaggaaccccaacctgt |
146 |
Q |
| |
|
|| |||||||||||||| || |||||||||| |
|
|
| T |
25707208 |
gaaagaaaatccacaagaaaacccaacctgt |
25707238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University