View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_28 (Length: 453)

Name: NF15182_high_28
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_28
NF15182_high_28
[»] chr1 (7 HSPs)
chr1 (19-442)||(15755480-15755903)
chr1 (19-442)||(15766349-15766772)
chr1 (19-442)||(15779464-15779908)
chr1 (258-382)||(15737625-15737749)
chr1 (257-376)||(15730021-15730140)
chr1 (256-385)||(33411586-33411715)
chr1 (109-248)||(15737455-15737594)
[»] chr7 (6 HSPs)
chr7 (336-389)||(39256586-39256639)
chr7 (339-391)||(39193595-39193647)
chr7 (339-391)||(39222948-39223000)
chr7 (336-386)||(39238620-39238670)
chr7 (345-386)||(39176879-39176920)
chr7 (339-392)||(39259835-39259888)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 15755480 - 15755903
Alignment:
Q  19 ccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttacataatctatgaaagaatcattgtcaagat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15755480 ccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttacataatctatgaaagactcattgtcaagat 15755579  T
Q  119 tatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagttgcatccatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15755580 tatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccacatagtgataatgacagttgcatccatg 15755679  T
Q  219 attgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcac 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755680 attgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatattcattttgctaccacaatttatacttatgggagtggctgaagcac 15755779  T
Q  319 ttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  15755780 ttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatattccttaactactactggaattggtag 15755879  T
Q  419 ttttctcagcacctttcttctctc 442  Q
    |||||||||||| |||||||||||    
T  15755880 ttttctcagcacttttcttctctc 15755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 15766349 - 15766772
Alignment:
Q  19 ccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttacataatctatgaaagaatcattgtcaagat 118  Q
    |||||||||||||  |  |||| ||| |||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  15766349 ccattggcaacttccatattccaccatcaagtttagctgcatttacaattttgaccatgattatcacttacatactctatgaaagtttcattgtcaagat 15766448  T
Q  119 tatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagttgcatccatg 218  Q
    ||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  15766449 tatgcaaaagttgactaagaatcctagagggattacactccttcaaagaatgagcatagggttcataatccacatagtgataatgatagttgcattcatg 15766548  T
Q  219 attgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcac 318  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15766549 attgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatattcattttgcttccacaatttatacttatgggagtggctgaagcac 15766648  T
Q  319 ttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtag 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15766649 ttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagccttggaacatcatactcattaactactactggaattggtag 15766748  T
Q  419 ttttctcagcacctttcttctctc 442  Q
    |||||||||||| |||||||||||    
T  15766749 ttttctcagcacttttcttctctc 15766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 15779464 - 15779908
Alignment:
Q  19 ccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttacataatctatgaaagaatcattgtcaagat 118  Q
    |||||||||||||  |  |||||||| ||||||||| ||||  |||| | || |||||||||||||| || ||||||||||||    || ||||||||||    
T  15779464 ccattggcaacttcgatattcctccatcaagtttaattgcagttacaatcttaaccatgattatcacgtatataatctatgaacatttctttgtcaagat 15779563  T
Q  119 tatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagttgcatccatg 218  Q
    |||||| | |||||| ||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||   ||    
T  15779564 tatgcagaggttgactaagaaccctagagggattactcttcttcaaagaatgagcataggattcataatccatatagtgataatgatagttgcatatttg 15779663  T
Q  219 attgaaagacatagacttagtgtggccaaaaaccatg---------------------aagttccattgagcatattcattttgctaccacaatttatac 297  Q
      |||||||||||||||   |||||||||| | ||||                     | ||||||||||||||||||||||||   ||||||||| |||    
T  15779664 gctgaaagacatagactatttgtggccaaagaacatggagtaattgaaaatggaggacaggttccattgagcatattcattttggctccacaatttgtac 15779763  T
Q  298 ttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcatt 397  Q
    |||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |  || || || ||    
T  15779764 ttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaagccccagaaagcatgaagagccttgggagttcgtattcctt 15779863  T
Q  398 aactactactggaattggtagttttctcagcacctttcttctctc 442  Q
    ||||||||| || ||||||||||| || ||||| |||||||||||    
T  15779864 aactactacgggcattggtagtttccttagcacttttcttctctc 15779908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 382
Target Start/End: Original strand, 15737625 - 15737749
Alignment:
Q  258 gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag 357  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| |  |||||| ||| ||||| ||||| |||||||||||||    
T  15737625 gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag 15737724  T
Q  358 caccagaaagcatgaagagtcttgg 382  Q
    | |||||||||||||||||||||||    
T  15737725 ctccagaaagcatgaagagtcttgg 15737749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 257 - 376
Target Start/End: Original strand, 15730021 - 15730140
Alignment:
Q  257 agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa 356  Q
    |||||||||||||||||||||||| || || |||||| |||||||||||   ||||| ||| ||||||||| ||| ||||| ||||| ||||||||||||    
T  15730021 agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa 15730120  T
Q  357 gcaccagaaagcatgaagag 376  Q
    || |||||||||||||||||    
T  15730121 gctccagaaagcatgaagag 15730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
Q  256 aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca 355  Q
    ||||||| ||||| || ||||||||||| || || |||||||||||||||   ||||| ||| || |||||| ||| ||||| |||||||||||||||||    
T  33411715 aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca 33411616  T
Q  356 agcaccagaaagcatgaagagtcttggaac 385  Q
    ||| |||||||||||||||||| |||||||    
T  33411615 agctccagaaagcatgaagagtattggaac 33411586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 15737455 - 15737594
Alignment:
Q  109 ttgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagt 208  Q
    ||||||||||||||||||| | ||| || || |||||||| ||| | || |||||||| ||| |||||||  | ||||| |||||| |||| |||  |||    
T  15737455 ttgtcaagattatgcaaaaatggactaaaaaccctagaggaattactctacttcaaaggatgggcataggcatgataattcatataatgattatggtagt 15737554  T
Q  209 tgcatccatgattgaaagacatagacttagtgtggccaaa 248  Q
    |||| |  | | ||||||| |||| |||||||| ||||||    
T  15737555 tgcaactttcactgaaagatataggcttagtgtagccaaa 15737594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
Q  336 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca 389  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  39256639 atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca 39256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
Q  339 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 391  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39193647 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
Q  339 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 391  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39223000 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
Q  336 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca 386  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||| ||||||    
T  39238670 atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca 39238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
Q  345 ttctatgatcaagcaccagaaagcatgaagagtcttggaaca 386  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  39176920 ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca 39176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
Q  339 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac 392  Q
    |||||||| || |||||||| ||||||  |||||| ||||||||||||||||||    
T  39259888 gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac 39259835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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