View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_29 (Length: 446)
Name: NF15182_high_29
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 91 - 442
Target Start/End: Complemental strand, 35029855 - 35029504
Alignment:
| Q |
91 |
taataatgtttgatgtaatacacttttttaatgttgcacgaataatataaacactaacgcatgttatgtgtgacagtgcatatcagaacgtaggatttac |
190 |
Q |
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| T |
35029855 |
taataatgttggatgtaatacactttttaaatgttgcacggataatataaacactaacgcatgttttgtgtgacagtgcatatcagaacgtaggatttac |
35029756 |
T |
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| Q |
191 |
tatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcatt |
290 |
Q |
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| T |
35029755 |
tatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcatt |
35029656 |
T |
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| Q |
291 |
cttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
390 |
Q |
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| T |
35029655 |
cttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
35029556 |
T |
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| Q |
391 |
atcagctccgatttcacacaaatgtgtgatctatgatcgatttcatctcact |
442 |
Q |
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| T |
35029555 |
atcaactctgatttcacacaaatgtgtgatctatgatcgatttcatatcact |
35029504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 177 - 368
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
| Q |
177 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
276 |
Q |
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| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
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| Q |
277 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc |
368 |
Q |
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| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc |
34970281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 165 - 385
Target Start/End: Complemental strand, 34952629 - 34952406
Alignment:
| Q |
165 |
agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa |
264 |
Q |
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| T |
34952629 |
agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa |
34952530 |
T |
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| Q |
265 |
aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctg |
364 |
Q |
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| T |
34952529 |
aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattg |
34952430 |
T |
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| Q |
365 |
attcttg---aatatcaattctac |
385 |
Q |
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|||| || |||||||||||||| |
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| T |
34952429 |
attcatgatcaatatcaattctac |
34952406 |
T |
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Back To:
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