View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_high_3 (Length: 683)
Name: NF15182_high_3
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 305 - 676
Target Start/End: Original strand, 48310078 - 48310449
Alignment:
| Q |
305 |
aaactcatgcacaaggttgtcaaaaacgcgatcttacaatattatagtctttaatgacttgggcgatcccgatcacggttaaaatcacaatttagcagga |
404 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48310078 |
aaactcatacacaaggttgtcaaaatcgcgatcttacaatattatagtctttaatgacttcggcgatcccgatcacggttaaaatcacaatttagcagga |
48310177 |
T |
|
| Q |
405 |
tcacatgggattgtagatcttactcgtgaaattggtcggattgtttgcaaacatcaaccaggttcatgggttggacgccacgacaccgttgacaacaaca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48310178 |
tcacatgggattgtagatcttactcgtgaaattggtgggattgtttgcgaacatcaaccaggttcatgggttggacgccacgacaccgttgacaacaaca |
48310277 |
T |
|
| Q |
505 |
tttttctgtgttaaaatgtggctgttcttttgacagagtttgggttctcggacgtctgttatggaagcttccttcggccgagtttttctccttgtgtatg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
48310278 |
tttttctgtgttaaaatgtggctgttcttttgacagagtttgggttctcggacgtctgttatggaagcttccctcggccgtgtttttctccttgtgtatg |
48310377 |
T |
|
| Q |
605 |
attttctcgttgatttcaaatttatgtttatttaagttattccaatttaaatggttttccttacctatgcta |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48310378 |
attttctcgttgatttcaaatttatgtttatttaagttattccaatttaaatggttttccttacttatgcta |
48310449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48309763 - 48309999
Alignment:
| Q |
1 |
aaaagaaccatcccatctctgtttctgatcttttttatttgtctatgtgcaacagtgtatgttttatgcagtatacctttgaattttacaaatatttgta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48309763 |
aaaagaaccattccatctctgtttctgatcttttttatttgtctatgtgcaacagtgtatgttttatgcagtatacctttgaattttacaaatatttgta |
48309862 |
T |
|
| Q |
101 |
gctcattttaattttttccacattacgaacttttgttttggtaattt-----------tgtgcaatgacactttattattatgatttgctttttaagtga |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48309863 |
gctcattttaattttttccacattatgaacttttgttttggtaattttgtgtaagacctgtgcaatgacactttattattatgatttgctttataagtga |
48309962 |
T |
|
| Q |
190 |
gttggaatgatgaagatttggtgttaatttcgatacc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48309963 |
gttggaatgatgaagatttggtgttaatttcgatacc |
48309999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University