View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_30 (Length: 440)
Name: NF15182_high_30
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 37 - 427
Target Start/End: Original strand, 33286698 - 33287088
Alignment:
| Q |
37 |
aatctaaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga |
136 |
Q |
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| T |
33286698 |
aatctcaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga |
33286797 |
T |
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| Q |
137 |
tctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaactgaaactcagaagaaaatgcaacaattgaacataacaca |
236 |
Q |
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| T |
33286798 |
tcttactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaactgaaactcagaagaaaatgcaacaattgaacataacaca |
33286897 |
T |
|
| Q |
237 |
tagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaataaacacttccattctgcgacgacaatctg |
336 |
Q |
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| T |
33286898 |
tagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaataaacacttccattctgcgacgacaatctg |
33286997 |
T |
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| Q |
337 |
gacactcaacaaaatctgggatttttccatcaactttatgaatctcaaggcgagagcaaagatgaaagaaaggagcaaccttcttatgatg |
427 |
Q |
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| T |
33286998 |
gacactcaacaaaatctgggatttttccagcaactttatgaatctcaaggtgagagcaaagatgaaaggaaggagcaaccttcttatgatg |
33287088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33141158 - 33141043
Alignment:
| Q |
287 |
atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg |
386 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | ||||||||| ||||| ||| |||| ||| ||||||||||| |
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| T |
33141158 |
atggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaattttcccagcaacattaggaatctcaagg |
33141059 |
T |
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| Q |
387 |
cgagagcaaagatgaa |
402 |
Q |
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| T |
33141058 |
tgagagcaaatatgaa |
33141043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33159778 - 33159663
Alignment:
| Q |
287 |
atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg |
386 |
Q |
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|||||| ||||||||| | ||| ||||||||||| |||| ||||||||||||||| || ||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
33159778 |
atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg |
33159679 |
T |
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| Q |
387 |
cgagagcaaagatgaa |
402 |
Q |
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| T |
33159678 |
tgagagcaaatatgaa |
33159663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33182622 - 33182507
Alignment:
| Q |
287 |
atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg |
386 |
Q |
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|||||| ||||||||| | ||| ||||||||||| |||| ||||||||||||||| || ||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
33182622 |
atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg |
33182523 |
T |
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| Q |
387 |
cgagagcaaagatgaa |
402 |
Q |
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| T |
33182522 |
tgagagcaaatatgaa |
33182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 33141389 - 33141318
Alignment:
| Q |
106 |
acaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacat |
177 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
33141389 |
acaaatagccttattctagttgcatttgtgatctcactgtgatcaacgataatgcaagactcatggctacat |
33141318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 33182838 - 33182746
Alignment:
| Q |
104 |
taacaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaa |
196 |
Q |
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||||||| |||||| || ||||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||| |
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| T |
33182838 |
taacaaacagccttcttttagttgcattcgtgatcttactatgatcaacaataatgcacgactcttggctacatcacacgaggggtacataaa |
33182746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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