View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_31 (Length: 433)

Name: NF15182_high_31
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_31
NF15182_high_31
[»] chr6 (33 HSPs)
chr6 (16-433)||(34064230-34064648)
chr6 (189-433)||(19730405-19730647)
chr6 (189-433)||(9403207-9403450)
chr6 (181-433)||(19276883-19277132)
chr6 (265-433)||(12449472-12449639)
chr6 (302-433)||(27860874-27861004)
chr6 (255-433)||(31295414-31295591)
chr6 (303-433)||(12424241-12424370)
chr6 (351-419)||(12487970-12488038)
chr6 (351-433)||(16343614-16343696)
chr6 (351-433)||(22497272-22497354)
chr6 (312-409)||(13823316-13823410)
chr6 (341-433)||(19305499-19305590)
chr6 (354-417)||(23768244-23768307)
chr6 (303-433)||(18566692-18566821)
chr6 (304-433)||(689786-689913)
chr6 (351-433)||(18147341-18147423)
chr6 (351-433)||(34187334-34187411)
chr6 (351-395)||(14184530-14184574)
chr6 (351-414)||(14921235-14921298)
chr6 (351-403)||(18994044-18994096)
chr6 (272-433)||(31423733-31423893)
chr6 (370-433)||(3404855-3404918)
chr6 (351-433)||(20148352-20148432)
chr6 (351-433)||(22184396-22184476)
chr6 (298-433)||(33596896-33597030)
chr6 (351-433)||(11087537-11087619)
chr6 (351-433)||(15480315-15480397)
chr6 (351-433)||(16131003-16131085)
chr6 (351-429)||(17380136-17380214)
chr6 (189-285)||(19723361-19723457)
chr6 (390-429)||(14080522-14080561)
chr6 (315-421)||(22572091-22572196)
[»] chr7 (22 HSPs)
chr7 (182-433)||(13291929-13292179)
chr7 (181-433)||(16986897-16987148)
chr7 (272-433)||(9135257-9135417)
chr7 (351-433)||(34854278-34854360)
chr7 (273-433)||(5925372-5925531)
chr7 (357-433)||(5928991-5929067)
chr7 (351-407)||(12265099-12265155)
chr7 (302-433)||(18774016-18774146)
chr7 (315-433)||(12644820-12644938)
chr7 (351-433)||(10287570-10287652)
chr7 (351-403)||(4781474-4781526)
chr7 (351-403)||(4813905-4813957)
chr7 (351-409)||(20034374-20034432)
chr7 (351-433)||(1979097-1979179)
chr7 (351-419)||(16204340-16204408)
chr7 (330-429)||(5863226-5863324)
chr7 (354-433)||(7486580-7486659)
chr7 (351-430)||(26762885-26762964)
chr7 (390-433)||(39879422-39879465)
chr7 (351-406)||(43172010-43172065)
chr7 (351-425)||(29373489-29373563)
chr7 (402-430)||(9573451-9573479)
[»] chr5 (18 HSPs)
chr5 (181-433)||(22865796-22866047)
chr5 (205-419)||(24546391-24546604)
chr5 (201-433)||(25537440-25537671)
chr5 (265-433)||(25828877-25829044)
chr5 (351-433)||(24647323-24647405)
chr5 (256-408)||(31202255-31202407)
chr5 (352-433)||(22903128-22903209)
chr5 (303-395)||(26348018-26348109)
chr5 (301-433)||(26994531-26994662)
chr5 (351-405)||(21213306-21213360)
chr5 (351-403)||(18799844-18799896)
chr5 (351-403)||(25679220-25679272)
chr5 (351-432)||(32418460-32418541)
chr5 (351-403)||(18803982-18804034)
chr5 (354-433)||(20025318-20025397)
chr5 (370-428)||(27083231-27083289)
chr5 (352-433)||(25333770-25333851)
chr5 (351-431)||(8938949-8939028)
[»] chr2 (23 HSPs)
chr2 (262-433)||(15825189-15825359)
chr2 (271-432)||(15390480-15390640)
chr2 (260-433)||(18135906-18136078)
chr2 (189-429)||(19050248-19050487)
chr2 (268-422)||(29711062-29711215)
chr2 (180-390)||(19290545-19290753)
chr2 (272-432)||(10923061-10923220)
chr2 (273-433)||(24157203-24157362)
chr2 (330-433)||(3586398-3586500)
chr2 (351-420)||(18772296-18772365)
chr2 (266-433)||(29137936-29138103)
chr2 (351-433)||(36267533-36267615)
chr2 (351-403)||(24318977-24319029)
chr2 (354-433)||(24499824-24499903)
chr2 (367-433)||(12169008-12169074)
chr2 (370-433)||(27846512-27846575)
chr2 (351-433)||(19919040-19919122)
chr2 (351-433)||(45258126-45258208)
chr2 (221-309)||(29743947-29744035)
chr2 (351-398)||(23257851-23257898)
chr2 (304-433)||(20120382-20120510)
chr2 (352-433)||(45715030-45715111)
chr2 (389-425)||(18770357-18770393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (220-433)||(379751-379963)
scaffold0002 (351-433)||(120985-121067)
[»] chr1 (21 HSPs)
chr1 (217-433)||(23728661-23728876)
chr1 (285-433)||(4601396-4601543)
chr1 (215-433)||(25408131-25408348)
chr1 (275-433)||(12177421-12177578)
chr1 (213-433)||(16299420-16299630)
chr1 (351-407)||(21098820-21098876)
chr1 (351-419)||(21682564-21682632)
chr1 (351-433)||(1659763-1659845)
chr1 (181-395)||(14254847-14255060)
chr1 (351-403)||(3590891-3590944)
chr1 (351-430)||(34273125-34273204)
chr1 (302-395)||(48637612-48637704)
chr1 (301-430)||(52565618-52565744)
chr1 (351-433)||(26977775-26977857)
chr1 (351-432)||(16050430-16050511)
chr1 (390-433)||(5671805-5671848)
chr1 (351-433)||(22414810-22414892)
chr1 (352-433)||(23280237-23280316)
chr1 (371-433)||(33101501-33101563)
chr1 (398-433)||(14255051-14255086)
chr1 (351-433)||(16030430-16030512)
[»] chr4 (18 HSPs)
chr4 (199-433)||(15741976-15742209)
chr4 (181-433)||(14601820-14602071)
chr4 (351-433)||(15514535-15514617)
chr4 (192-433)||(16012288-16012527)
chr4 (318-429)||(5518579-5518689)
chr4 (266-433)||(19643737-19643903)
chr4 (272-433)||(1638214-1638374)
chr4 (351-430)||(13896453-13896532)
chr4 (315-433)||(12683820-12683937)
chr4 (351-433)||(47253312-47253394)
chr4 (265-419)||(2674462-2674616)
chr4 (302-414)||(18463854-18463965)
chr4 (351-403)||(19564026-19564078)
chr4 (351-411)||(25066201-25066261)
chr4 (351-433)||(29157137-29157219)
chr4 (351-409)||(17110756-17110814)
chr4 (371-433)||(19809736-19809798)
chr4 (351-403)||(12415500-12415552)
[»] scaffold0380 (1 HSPs)
scaffold0380 (255-428)||(6739-6911)
[»] chr3 (23 HSPs)
chr3 (248-433)||(14859971-14860155)
chr3 (269-433)||(12516220-12516383)
chr3 (181-433)||(12731366-12731617)
chr3 (195-428)||(25495978-25496210)
chr3 (272-433)||(431212-431372)
chr3 (301-433)||(1770860-1770992)
chr3 (330-425)||(16704445-16704539)
chr3 (273-414)||(20122676-20122816)
chr3 (354-433)||(28715465-28715544)
chr3 (351-429)||(9801058-9801136)
chr3 (301-387)||(12108500-12108585)
chr3 (351-433)||(30606963-30607045)
chr3 (352-433)||(17143724-17143805)
chr3 (385-433)||(9781514-9781562)
chr3 (255-342)||(12256952-12257039)
chr3 (351-402)||(20118951-20119002)
chr3 (385-425)||(12252031-12252071)
chr3 (351-395)||(17396796-17396840)
chr3 (352-407)||(20622469-20622524)
chr3 (266-428)||(7835464-7835625)
chr3 (351-433)||(21342261-21342343)
chr3 (355-425)||(2311812-2311882)
chr3 (351-433)||(28723748-28723830)
[»] scaffold0205 (2 HSPs)
scaffold0205 (181-433)||(22921-23172)
scaffold0205 (351-433)||(10889-10971)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-433)||(215307-215558)
[»] scaffold0479 (1 HSPs)
scaffold0479 (259-428)||(5078-5246)
[»] scaffold0294 (1 HSPs)
scaffold0294 (301-433)||(167-299)
[»] chr8 (18 HSPs)
chr8 (273-433)||(11776140-11776299)
chr8 (288-433)||(24576495-24576639)
chr8 (352-433)||(23243819-23243900)
chr8 (281-433)||(3459390-3459540)
chr8 (304-433)||(21416773-21416901)
chr8 (352-411)||(4565368-4565427)
chr8 (351-409)||(20055623-20055680)
chr8 (301-433)||(17698210-17698341)
chr8 (356-433)||(6928069-6928146)
chr8 (351-428)||(30477681-30477758)
chr8 (351-433)||(24507492-24507574)
chr8 (301-433)||(26916823-26916954)
chr8 (351-433)||(13754793-13754875)
chr8 (351-429)||(18322982-18323060)
chr8 (355-403)||(14666818-14666866)
chr8 (301-386)||(23269316-23269400)
chr8 (301-433)||(5859850-5859981)
chr8 (314-382)||(16214713-16214780)
[»] scaffold0103 (1 HSPs)
scaffold0103 (304-432)||(40832-40959)
[»] scaffold0464 (1 HSPs)
scaffold0464 (260-433)||(11551-11719)
[»] scaffold0013 (1 HSPs)
scaffold0013 (351-433)||(4398-4480)
[»] scaffold0291 (1 HSPs)
scaffold0291 (272-433)||(15326-15486)
[»] scaffold0263 (1 HSPs)
scaffold0263 (303-430)||(20424-20550)
[»] scaffold0092 (2 HSPs)
scaffold0092 (351-428)||(21592-21669)
scaffold0092 (199-291)||(21441-21533)
[»] scaffold0096 (1 HSPs)
scaffold0096 (351-407)||(42309-42365)
[»] scaffold0140 (1 HSPs)
scaffold0140 (302-433)||(6333-6463)
[»] scaffold0360 (1 HSPs)
scaffold0360 (351-433)||(13957-14039)
[»] scaffold0518 (1 HSPs)
scaffold0518 (328-413)||(9029-9113)
[»] scaffold0023 (1 HSPs)
scaffold0023 (351-433)||(95784-95866)
[»] scaffold0057 (1 HSPs)
scaffold0057 (317-421)||(73743-73846)
[»] scaffold0054 (1 HSPs)
scaffold0054 (351-433)||(68776-68856)
[»] scaffold0074 (1 HSPs)
scaffold0074 (351-403)||(53247-53299)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 34064648 - 34064230
Alignment:
Q  16 cacacatatggataatccattaccaaaataatattttgtcagttgaccttgtagggcttttatgcttttttaccgttgagaaatgatgtttatacaacta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34064648 cacacatatggataatccattaccaaaataatattttgtcagttgaccttgtagggcttttatgcctttttaccgttgagaaatgatgtttatacaacta 34064549  T
Q  116 tataataacaattttttggacaactcttcttc---tactctcaaataatatatgttatggaccggtcagtggccaaacttacaccaccttaagactccac 212  Q
    |||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  34064548 tataatgacaattttttggacaactcttcttctcgtactctcaaataatatatgttatggaccggtcagtggccgaacttacacctccttaagactccac 34064449  T
Q  213 atttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgc 312  Q
    | |||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  34064448 acttaaggaagcacgccatcttgcgtaca-cgtaccacacaggagcgcgccttcgcgcaaggatcaccatacatgtgtcctacttcgcccctaatcacgt 34064350  T
Q  313 gccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttac 412  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34064349 gccgcataacccggtgacggttatggccaactcgcgc-ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttac 34064251  T
Q  413 acactctttctcagttccatt 433  Q
    ||||||||||| |||| ||||    
T  34064250 acactctttcttagtttcatt 34064230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 189 - 433
Target Start/End: Original strand, 19730405 - 19730647
Alignment:
Q  189 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 288  Q
    |||| ||||||||  ||||||| || ||||||||||| |||| ||||||| |||| || |||||| ||| | ||||||||||||| |||||||||||| |    
T  19730405 acttgcaccacctcgagactcctcacttaagggagcatgcca-cttgcgtgcaccatatcacataggagtgtgccttcgcgcaagtatcaccctacatat 19730503  T
Q  289 gtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacac 388  Q
     |||| ||||||||| ||||||  |  | |||||  ||  |||||||| |||||  ||| | ||||||||||||||||||||||||||||||||||||||    
T  19730504 ttcctgcttcgccccaaatcacatgttgtataacctggacacggttatagccaatgcgcac-ctatataagggtgaacttgcttcaccctcaaggtacac 19730602  T
Q  389 atcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  19730603 atcactttacacgacacttcttacacactctttctcagttccatt 19730647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 189 - 433
Target Start/End: Complemental strand, 9403450 - 9403207
Alignment:
Q  189 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 288  Q
    |||| |||| ||| ||||||| ||| |||||||| || |||| ||||||| |||| |  |||| |  ||||||||||| | |||||| ||||||||| ||    
T  9403450 acttgcaccgcctcaagactctacacttaagggaacatgccagcttgcgtgcaccatgccacacaaaagcgcgccttcacacaaggaccaccctacacgt 9403351  T
Q  289 gtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacac 388  Q
    ||||| ||||| ||||   |||  | ||||||||   | | | |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  9403350 gtcctgcttcgtccctggccacatgtcgcataacctagaggcagttatggccaacgcgcac-ctatataagggtgaacttgcttcaccctcaaggtacac 9403252  T
Q  389 atcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  9403251 atcactttccacaacacttcttacacactctttctcagttccatt 9403207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 181 - 433
Target Start/End: Original strand, 19276883 - 19277132
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||||||  |||||  ||||| ||||||||| | || ||||||||||| |  |||| ||| ||  |||| | ||| ||||||| || | |||||||||    
T  19276883 gtggccaaagatacacagccttaggactccacactcaaaggagcacgccagcacgcgtgcactgtgccacacaagagtgcgcctt-gcacgaggatcacc 19276981  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
      |||||| |||| || ||| ||||||||  ||||||||||| | | |||||||||| ||||  ||||| ||||||||||||||||||||||||||||||    
T  19276982 acacatgtatcctgctccgctcctaatcatacgccgcataac-cagagacggttatgaccaaagcgcgc-ctatataagggtgaacttgcttcaccctca 19277079  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19277080 aggtacacatcacttttcacaacacttcttacacactctttctcatttccatt 19277132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 433
Target Start/End: Original strand, 12449472 - 12449639
Alignment:
Q  265 tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtga 364  Q
    ||||||||||||||||||| | ||| |||||| ||||||||||||| | | |||||||  || ||| |||||| ||||| ||||| |||||||||||| |    
T  12449472 tcgcgcaaggatcaccctagacgtggcctactccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgc-ctatataagggtaa 12449570  T
Q  365 acttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  12449571 acttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccatt 12449639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 302 - 433
Target Start/End: Original strand, 27860874 - 27861004
Alignment:
Q  302 cctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 401  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  27860874 cctaatcacacgccgcataacccggagacggttatggccaacacgcgc-ctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcaca 27860972  T
Q  402 acacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||| |||| | |||||||||||    
T  27860973 acacttcttacactctctctttcagttccatt 27861004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 255 - 433
Target Start/End: Original strand, 31295414 - 31295591
Alignment:
Q  255 gagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctat 354  Q
    |||||||| ||| |||||||||||||||||| ||||| | || ||  ||||||||| ||  ||||||| ||  |||||||||||||||| | ||| ||||    
T  31295414 gagcgcgctttcacgcaaggatcaccctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgc-ctat 31295512  T
Q  355 ataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
     |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  31295513 gtaagggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcatt 31295591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 433
Target Start/End: Original strand, 12424241 - 12424370
Alignment:
Q  303 ctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgc-tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 401  Q
    ||||||||  |||||||||| ||| |||||||||| |  ||  |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  12424241 ctaatcacatgccgcataacccggagacggttatgtc--acgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcaca 12424338  T
Q  402 acacttcttacacactctttctcagttccatt 433  Q
    |||||| ||| ||  ||| |||||||||||||    
T  12424339 acactttttagactttctctctcagttccatt 12424370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 12487970 - 12488038
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 419  Q
    |||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  12487970 ctatataagggtgaacttgtatcaccctcaatgtacacatcacttttcacaacactacttacacactct 12488038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 16343696 - 16343614
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| |||||||||||||||  |||| |||||||||||||| |||||||||||||||||  ||| |||||||||||||    
T  16343696 ctatataagtgtgaacttgcttcacattcaaagtacacatcactttccacaacacttcttacactttctctctcagttccatt 16343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 22497272 - 22497354
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||| | || ||||||||    
T  22497272 ctatatatgggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccatt 22497354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 13823316 - 13823410
Alignment:
Q  312 cgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttct 409  Q
    ||||||||||||||| |||||||||| |||| | |||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  13823316 cgccgcataactcggagacggttatg-ccaagt-gcgc-ctatataaaggtgaacttgcttcaccctcaaggtacacaacactttttacaacaattct 13823410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 341 - 433
Target Start/End: Complemental strand, 19305590 - 19305499
Alignment:
Q  341 aactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||  ||||||||||| ||||||||||||    
T  19305590 aactcgcgc-ctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccatt 19305499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 23768307 - 23768244
Alignment:
Q  354 tataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacact 417  Q
    ||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||||||||    
T  23768307 tataagggtgaacttgctttacccttgaggtacacatcactttccacaacacttcttacacact 23768244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 18566821 - 18566692
Alignment:
Q  303 ctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaa 402  Q
    |||||||| |||||||||||   | ||||  |||| ||||| ||||| |||||||  ||||||||||| |||||||||||||| || |||||||| ||||    
T  18566821 ctaatcacacgccgcataacctagagacgagtatgaccaacccgcgc-ctatatagaggtgaacttgcctcaccctcaaggtagacttcactttttacaa 18566723  T
Q  403 cacttcttacacactctttctcagttccatt 433  Q
    | |||  |||||| |||||||||||||||||    
T  18566722 cgctttctacacaatctttctcagttccatt 18566692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 433
Target Start/End: Original strand, 689786 - 689913
Alignment:
Q  304 taatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||| ||||||| ||||||| |||| |||||  ||||  |||| |||||||||||||| |||| | || |||||||||||   ||||||||||||||    
T  689786 taatcacacgccgcaaaactcggagacgattatgatcaacgtgcgc-ctatataagggtgaccttgat-cagcctcaaggtacgattcacttttcacaac 689883  T
Q  404 acttcttacacactctttctcagttccatt 433  Q
    ||||  ||||||| ||||||||||||||||    
T  689884 actttatacacacactttctcagttccatt 689913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 18147423 - 18147341
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||  |||||||||||| ||||||    ||||||||||||||||||  ||||||||||||||| ||||||||    
T  18147423 ctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccatt 18147341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 34187411 - 34187334
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||    |||||||||||||||||||  ||||||| ||| |||||| |||||||||||||||||||||||||    
T  34187411 ctatataagggtga----gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccatt 34187334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 14184530 - 14184574
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcactt 395  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  14184530 ctatataagggtgaacttgcttcaccctcaaggtacacaacactt 14184574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 14921235 - 14921298
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacac 414  Q
    ||||||||| ||||||||||||||||||| | | ||||| ||||||||||| ||||||||||||    
T  14921235 ctatataagtgtgaacttgcttcaccctccaaggacacaacacttttcacatcacttcttacac 14921298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 18994096 - 18994044
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||| |||||    
T  18994096 ctatataagggtgaacttgcttcaacctcagggtacacaacacttttaacaac 18994044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 433
Target Start/End: Original strand, 31423733 - 31423893
Alignment:
Q  272 aggatcaccctacatgtgtcctact--tcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttg 369  Q
    |||||||||||||||||||||| ||  | | |||  ||||| || |||||||| |||  ||||| ||| ||||| ||||| ||||||||||||| |||||    
T  31423733 aggatcaccctacatgtgtcct-ctaattgtccccgatcacacgtcgcataacccggacacggt-atgcccaacacgcgc-ctatataagggtgcacttg 31423829  T
Q  370 cttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||  |    |||||| |||||||||||  |||| |||||||||||||| ||||    
T  31423830 cttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttcatt 31423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 3404855 - 3404918
Alignment:
Q  370 cttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||    ||| ||||||||||||||  ||||||||||||||||||||||||    
T  3404855 cttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccatt 3404918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 20148432 - 20148352
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||| ||||||||||| ||||||||    |||||||||||||||||  ||  ||||||||||||| |||||||    
T  20148432 ctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacact--ttctacactctttctcaattccatt 20148352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 22184396 - 22184476
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||| ||||||||||| ||||||||    |||||||||||||||||  ||  ||||||||||||| |||||||    
T  22184396 ctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacact--ttctacactctttctcaattccatt 22184476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 433
Target Start/End: Complemental strand, 33597030 - 33596896
Alignment:
Q  298 cgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 397  Q
    ||||||||||||  ||||||||||  |||||||  |||||  |||  ||||| ||||||||| |||||||||||||| ||||||||||    ||  ||||    
T  33597030 cgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgc-ctatataagagtgaacttgcttcatcctcaaggtatgattccatttt 33596932  T
Q  398 cacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||  |||||||| ||||| |||| ||||    
T  33596931 cacaacactttctacacactttttcttagtttcatt 33596896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 11087619 - 11087537
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||| |||| ||||||||||    ||||||||||||||||    |||| |||||||||||||| ||||    
T  11087619 ctatataagggtgaacttgtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacatt 11087537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 15480315 - 15480397
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||  | ||||||| |||||||||    ||||||||||||||||||  |||||||| |||||||||| ||||    
T  15480315 ctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcatt 15480397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 16131085 - 16131003
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| |||||| |||||||||||||||    |||| |||||||||||||  |  ||||||||| |||||||||||    
T  16131085 ctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccatt 16131003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 17380214 - 17380136
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttc 429  Q
    |||||||||||||| ||||| ||| ||| ||||||    ||||||||||||||||||  | ||||||||||||||||||    
T  17380214 ctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttc 17380136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 19723361 - 19723457
Alignment:
Q  189 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctaca 285  Q
    ||||||||| ||| |||||||| || ||||| |||||||||| |   ||| |||| || |||| | ||||||||||||  |||||||||||||||||    
T  19723361 acttacaccgcctcaagactccgcacttaagagagcacgccagcccacgtgcaccataccacacaggagcgcgccttcaagcaaggatcaccctaca 19723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 429
Target Start/End: Complemental strand, 14080561 - 14080522
Alignment:
Q  390 tcacttttcacaacacttcttacacactctttctcagttc 429  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  14080561 tcacttttcacaacacttactacacactctttctcagttc 14080522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 22572196 - 22572091
Alignment:
Q  315 cgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacac 414  Q
    ||||||||  || ||||||||||  |||| ||||| | |||||| ||||||||||||||||||||||| ||    ||||||| |||||||| |  |||||    
T  22572196 cgcataacctggagacggttatgctcaacgcgcgc-caatataaaggtgaacttgcttcaccctcaagatatgattcactttacacaacaccttctacac 22572098  T
Q  415 actcttt 421  Q
    |||||||    
T  22572097 actcttt 22572091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 182 - 433
Target Start/End: Original strand, 13291929 - 13292179
Alignment:
Q  182 tggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccc 281  Q
    ||||| ||||| |||| ||| ||| |||| ||| ||||| ||||||||| |||||||  |||||  |||| | |||||||||||||||||||||||||||    
T  13291929 tggccgaacttgcaccgcctcaaggctccgcatctaaggaagcacgccagcttgcgtgaaccgtgccacacaggagcgcgccttcgcgcaaggatcaccc 13292028  T
Q  282 tacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaa 381  Q
    |||| ||||| | || || |||||| ||| ||||||||||| ||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  13292029 tacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggttatggccaacgcgcgc-ctatataatggtgaacttgcttcaccctcaa 13292127  T
Q  382 ggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  13292128 ggtacacatcacttttcacaacacttcttacacactctttttcagtttcatt 13292179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 433
Target Start/End: Original strand, 16986897 - 16987148
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||| ||||||| |||| ||||||| |||| | | | | ||||||||||| || || | ||||||  |||||| ||| | ||| |||| |||||||||||    
T  16986897 gtggtcaaacttgcaccgccttaaggctccgcgtctgaaggagcacgccaactcgcatgcaccgtgccacataggagtgtgccctcgcacaaggatcacc 16986996  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
    || || ||||||| || |  |||||||||| | ||||||||  ||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |    
T  16986997 ctgcacgtgtcctgctccatccctaatcacacaccgcataatccggagacggttatggccaacgcgcgc-ctatataagggtgaacttgcttcaccttta 16987095  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16987096 agggacacatcacttttcacaacacttcttacacactctttctcaattccatt 16987148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 433
Target Start/End: Original strand, 9135257 - 9135417
Alignment:
Q  272 aggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgct 371  Q
    ||||||||| |||||||||||| || || |||||||||| |||  |||||| ||| |||||||||| ||||  || |  ||||||||||||||| |||||    
T  9135257 aggatcaccttacatgtgtcctcctccgtccctaatcacacgctacataacccggagacggttatgaccaatacgtgt-ctatataagggtgaatttgct 9135355  T
Q  372 tcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||    ||||||||||||||| || ||||||||||||||||| |||||||    
T  9135356 tcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccatt 9135417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 34854360 - 34854278
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  34854360 ctatataagggtgaacttgtttcaccctcagagtacacatcacttttcacaacatttcttacacactctttctcagtttcatt 34854278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 433
Target Start/End: Original strand, 5925372 - 5925531
Alignment:
Q  273 ggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgc-tatataagggtgaacttgct 371  Q
    ||||||| ||||| |||||||  | |||| |  ||||| ||||||||||| ||| |||||||||| |  ||  |||||| || |||||||||||||||||    
T  5925372 ggatcacgctacacgtgtccttttccgcctcagatcacacgccgcataacccggagacggttatgcc--acgagcgcgcctacataagggtgaacttgct 5925469  T
Q  372 tcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| ||||| |||||||||| |||||||||| ||  ||| |||||||||||||    
T  5925470 tcaccctcaaggaacacaacacttttcacgacacttcttagactttctctctcagttccatt 5925531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 5928991 - 5929067
Alignment:
Q  357 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||| | |||||||||||    
T  5928991 aagggtgaatttgcttcacccccaagggacacatcacttttcacaacacttcttacactctctctttcagttccatt 5929067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 12265099 - 12265155
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 407  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  12265099 ctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacactt 12265155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 433
Target Start/End: Complemental strand, 18774146 - 18774016
Alignment:
Q  302 cctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcg-ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    ||||||||  ||||||||||||||| |||||||||| ||||   || || ||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  18774146 cctaatcatacgccgcataactcggagacggttatg-ccaaga-gcacgtctatataagggtgaatttgtttcaccctcaaggtacacaacacttttcac 18774049  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
     |||||||||  ||  ||| |||||||||||||    
T  18774048 tacacttctttgactttctctctcagttccatt 18774016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 12644938 - 12644820
Alignment:
Q  315 cgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttca-caacacttcttaca 413  Q
    |||||||| ||  |||||||||| ||||| ||||| || || ||||||||||||||||||||||||| |||||  |||||||||| ||||||||   |||    
T  12644938 cgcataacccgaagacggttatgaccaacgcgcgc-ctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccaca 12644840  T
Q  414 cactctttctcagttccatt 433  Q
    |||| |||||||||||||||    
T  12644839 cactttttctcagttccatt 12644820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 10287570 - 10287652
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| |||||| | |||||||||||||    |||||||||||||||||||||||||||| |||||||| ||||||    
T  10287570 ctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccatt 10287652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 4781474 - 4781526
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4781474 ctatataagggtgaacttgcttcaccctcaaggtacacaacactttacacaac 4781526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 4813905 - 4813957
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4813905 ctatataagggtgaacttgcttcaccctcaaggtacacaacactttacacaac 4813957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 20034432 - 20034374
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttct 409  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||||    
T  20034432 ctatataagggtgtacttgctttaccctcaaggtacacaacacttttcactacacttct 20034374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 1979179 - 1979097
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| |||||||||||||||| | |||  |||||| |||| |||||||||||||||| ||  ||| |||||||||||||    
T  1979179 ctatataaaggtgaacttgcttcactcccaatatacacaacactcttcacaacacttcttagactttctctctcagttccatt 1979097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 16204408 - 16204340
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 419  Q
    ||||||||||||||| || ||||||||| ||||||    ||||||||||||||||||  ||||||||||    
T  16204408 ctatataagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 5863324 - 5863226
Alignment:
Q  330 cggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttc 429  Q
    |||||||  ||||| ||||| ||||| ||||||||  ||||| |||||||||||||    |||||||| |||||| ||  ||||||||||||||||||||    
T  5863324 cggttatttccaacgcgcgc-ctatacaagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttc 5863226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 7486659 - 7486580
Alignment:
Q  354 tataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||| ||||||| | |||| |    |||||||||||||||| |  |||||| |||||||||||||||||    
T  7486659 tataagggtgaactttcttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccatt 7486580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 26762885 - 26762964
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttcc 430  Q
    ||||||| |||||  ||||||||||||||||||||    ||||||||||||||||||  |||||||| ||| | ||||||    
T  26762885 ctatatatgggtgtccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcc 26762964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 433
Target Start/End: Complemental strand, 39879465 - 39879422
Alignment:
Q  390 tcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||    
T  39879465 tcactttttacaacactttttacacactctttctcagtttcatt 39879422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 43172010 - 43172065
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacact 406  Q
    ||||||||||||||| ||||||||||||||| |||    |||||||||||||||||    
T  43172010 ctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 29373563 - 29373489
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctca 425  Q
    |||||| |||||||  |||||||||||||||||||    ||| ||||||||||| ||  ||||||||||||||||    
T  29373563 ctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctca 29373489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 9573451 - 9573479
Alignment:
Q  402 acacttcttacacactctttctcagttcc 430  Q
    |||||||||||||||||||||||||||||    
T  9573451 acacttcttacacactctttctcagttcc 9573479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 181 - 433
Target Start/End: Complemental strand, 22866047 - 22865796
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||||||||| |||| ||| |||||||| || |||||||||||||||| ||||||| |||  |  |||||| ||| ||||||||||||||||||||||    
T  22866047 gtggccaaactttcaccgcctcaagactccgcacttaagggagcacgccagcttgcgtgcactattccacataagagtgcgccttcgcgcaaggatcacc 22865948  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
    ||||| ||||| | || || ||||||||||  | |||||||  |||  ||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  22865947 ctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgc-ctatataagggtgaacttgcttcaccctca 22865849  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  22865848 aggtacacatcacttttcacaacatttcttacacactttttctcagttccatt 22865796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 205 - 419
Target Start/End: Complemental strand, 24546604 - 24546391
Alignment:
Q  205 gactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccct 304  Q
    |||||| || |||||||||||||||| ||||||| ||||||  |||| | |||||| ||| |||||||||||||||||||| ||||| | || || ||||    
T  24546604 gactccgcacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccct 24546505  T
Q  305 aatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaac-ttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||| ||||||||||| ||| |||||||||||| ||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  24546504 aatcacacgccgcataacccggagacggttatggctaacgcgcgc-ctatataagggtgaactttgcttcaccttcaaggtacacatcac-tttcacaac 24546407  T
Q  404 acttcttacacactct 419  Q
    |||||||| |||||||    
T  24546406 acttcttatacactct 24546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 433
Target Start/End: Complemental strand, 25537671 - 25537440
Alignment:
Q  201 ttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgc 300  Q
    |||||||||| || |||||||||||| ||| |  ||||||||| |  |||||| |||| |||| |||||||||||| |||||| | || ||||  ||||     
T  25537671 ttaagactccgcacttaagggagcacaccagcacgcgtacaccatgccacataggagctcgccctcgcgcaaggattaccctatacgtttcctgattcgt 25537572  T
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    |||||||||| || | ||||||  || ||||||| |||||||  ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  25537571 ccctaatcacacgtcacataacctggagacggttttggccaaggcgcgc-ctatataagggtgaactttcttcaccctcaaggtatacatcacttttcac 25537473  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
    |||||||| |||||| |||||||||||||||||    
T  25537472 aacacttcatacacaatctttctcagttccatt 25537440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 433
Target Start/End: Original strand, 25828877 - 25829044
Alignment:
Q  265 tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtga 364  Q
    ||||||||||||| ||||||| |||||||| | ||||||||||||| ||||||||||| ||| ||||| |||||||||| |||    |||||| ||||||    
T  25828877 tcgcgcaaggatcgccctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacggctatggccaacacgcttt-tatatacgggtga 25828975  T
Q  365 acttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  25828976 acttgtttcaccctcaagggacacatcacttttcacaatacttcttacacactttttctcaattccatt 25829044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 24647405 - 24647323
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  24647405 ctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccatt 24647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 408
Target Start/End: Original strand, 31202255 - 31202407
Alignment:
Q  256 agcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctata 355  Q
    ||||||||  ||||| ||||| |||||||| ||||| | || | ||||||||||| |||||||||||   | |||||||||| |||||  |||| |||||    
T  31202255 agcgcgcccccgcgcgaggattaccctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatgaccaacgtgcgc-ctata 31202353  T
Q  356 taagggtgaacttgcttcaccctcaaggtaca-catcacttttcacaacacttc 408  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  31202354 taagggtgaacttgcttcaccctcaaggtacattatcactttccacaacacttc 31202407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 22903209 - 22903128
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||  ||| |||||||||||||||    ||||||||||||||||||  ||||||||||||||||||||||||    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccatt 22903128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 26348018 - 26348109
Alignment:
Q  303 ctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcactt 395  Q
    |||||||| || |||||||| ||| |||| ||||||  |||  |||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  26348018 ctaatcacacgtcgcataacccggagacgtttatggaaaacatgcgc-ctatataagggtgaacttgcttcaccctcaaggtacacaacactt 26348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 433
Target Start/End: Original strand, 26994531 - 26994662
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    |||||||||| ||||||| ||||||  ||||||||    |||| ||||| |||||||||||||| |||||||||||| |||||||    |||||||||||    
T  26994531 ccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgc-ctatataagggtgaccttgcttcacccccaaggtatgattcacttttcac 26994629  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
    ||||| |  || ||||||||||||| |||||||    
T  26994630 aacaccttctaaacactctttctcaattccatt 26994662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 21213360 - 21213306
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacac 405  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  21213360 ctatataagggtgaacttgcttcaccctcaagctacacaacacttttcactacac 21213306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 18799896 - 18799844
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||||||    
T  18799896 ctatataagggtgaacttgcttcatcatcaaggtacacaacacttttcacaac 18799844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 25679220 - 25679272
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  25679220 ctatataagggtgaacttgcttcaccctcaagctagacaacacttttcacaac 25679272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 32418460 - 32418541
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccat 432  Q
    ||||| |||||||||||||||||| ||||||||||    ||||| |||||||||||   ||||||||||||||| |||||||    
T  32418460 ctatacaagggtgaacttgcttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctctgttccat 32418541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 18804034 - 18803982
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||| ||||||| ||||||||||||||||||||||| || ||||||||||    
T  18804034 ctatatacgggtgaaattgcttcaccctcaaggtacacaacaattttcacaac 18803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 20025397 - 20025318
Alignment:
Q  354 tataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||| || ||||||||||||||| |    ||||||| ||||||||||  ||||||||||||||||||| ||||    
T  20025397 tataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagtttcatt 20025318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 27083231 - 27083289
Alignment:
Q  370 cttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    ||||||||||||||||    ||||||||||||||||||  ||||||||||||| |||||    
T  27083231 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtt 27083289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 25333851 - 25333770
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| ||||||||||||||| ||||| |||    |||||||| |||||||||  |||||||||| ||| |||| ||||    
T  25333851 tatataagagtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacatt 25333770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 8939028 - 8938949
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttcca 431  Q
    |||||||| |||||  | ||||||||||||| |||    ||||||||| || ||||| |||||||||||||||||||||||    
T  8939028 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttccca-cactttttacacactctttctcagttcca 8938949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 262 - 433
Target Start/End: Complemental strand, 15825359 - 15825189
Alignment:
Q  262 ccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataaggg 361  Q
    ||||||| ||||||||||||||||||||||||||| || || ||| ||| ||||||||||||||  |||||||||| ||||| ||||| ||||| |||||    
T  15825359 ccttcgcacaaggatcaccctacatgtgtcctactccgtccttaaacacacgccgcataactcgaagacggttatgaccaacgcgcgc-ctatacaaggg 15825261  T
Q  362 tgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  15825260 tgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccatt 15825189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 271 - 432
Target Start/End: Original strand, 15390480 - 15390640
Alignment:
Q  271 aaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgc 370  Q
    ||||||||||||||| ||||||| || || |||||||||| |  |||||||| ||| ||||||||||||| || ||||| ||||||||||||||||||||    
T  15390480 aaggatcaccctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgc-ctatataagggtgaacttgc 15390578  T
Q  371 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  15390579 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactgtttattagttccat 15390640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 18136078 - 18135906
Alignment:
Q  260 cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataag 359  Q
    |||| ||||||||||||||||||||||||||||| |  || |||||||||| || ||||| ||  || ||| ||  ||||||||  |||| |||||||||    
T  18136078 cgccgtcgcgcaaggatcaccctacatgtgtcctgcaccgtccctaatcacacgtcgcattacgtggagacagtagtggccaacgtgcgc-ctatataag 18135980  T
Q  360 ggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18135979 ggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccatt 18135906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 189 - 429
Target Start/End: Original strand, 19050248 - 19050487
Alignment:
Q  189 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 288  Q
    ||||||||| |||||||||||| || || |||||||| || | || |||| |||| || |||| | ||||||||||| |||||| ||||||||||||  |    
T  19050248 acttacaccgccttaagactccgcactttagggagcaagcgacctcgcgtgcaccataccacacaggagcgcgcctttgcgcaaagatcaccctacacat 19050347  T
Q  289 gtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacac 388  Q
    ||||| || |   ||||||||  ||||||||||| ||| |   |||||||||||| |  || |||||||||||||||||| |||||| |||| |||||||    
T  19050348 gtcctgctccatgcctaatcatacgccgcataacccggagttagttatggccaacgcaagc-ctatataagggtgaacttacttcactctcagggtacac 19050446  T
Q  389 atcacttttcacaacacttcttacacactctttctcagttc 429  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  19050447 atcacttttcacaacacttcttacactctctttcttagttc 19050487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 268 - 422
Target Start/End: Complemental strand, 29711215 - 29711062
Alignment:
Q  268 cgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaact 367  Q
    |||| ||||||| ||||| || |||| |  ||| |||||||||  |||||||||| ||| |||||||| | ||||  ||||| |||||||||||||||||    
T  29711215 cgcagggatcacgctacacgtatccttccccgctcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgc-ctatataagggtgaact 29711117  T
Q  368 tgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttc 422  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  29711116 tgcttcaccctcaaggtacacatcacttttcacaacacttcgtacactctctttc 29711062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 390
Target Start/End: Complemental strand, 19290753 - 19290545
Alignment:
Q  180 agtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcac 279  Q
    ||||||| |||||||||||||| ||| ||||||||| || ||||||||| ||||||||| ||||||  |||| | |||||||||| ||||||||||||      
T  19290753 agtggcctaacttacaccacctcaaggctccacattcaaaggagcacgcaatcttgcgtgcaccgtgccacacaggagcgcgcctccgcgcaaggatcgt 19290654  T
Q  280 cctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctc 379  Q
    | |||| |||||||  | |||  |||||||  ||| ||||||| ||| |||||||||| || |  |||   ||||||||||||||||||||||||||||     
T  19290653 catacacgtgtcct-ttccgcttctaatcatacgctgcataacccggagacggttatgacccaagcgc-atctatataagggtgaacttgcttcaccctt 19290556  T
Q  380 aaggtacacat 390  Q
    |||||||||||    
T  19290555 aaggtacacat 19290545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 432
Target Start/End: Original strand, 10923061 - 10923220
Alignment:
Q  272 aggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgct 371  Q
    |||||||||||||| |||||||  | || | |||||||| ||||||||||  ||  ||| |||||| ||||| | || | ||||||||||||||||||||    
T  10923061 aggatcaccctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtg-tatataagggtgaacttgct 10923159  T
Q  372 tcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccat 432  Q
    |||||||||||| |||| |||||||||||| |||||  |||||||||||| | ||||||||    
T  10923160 tcaccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccat 10923220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 433
Target Start/End: Original strand, 24157203 - 24157362
Alignment:
Q  273 ggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgctt 372  Q
    ||||||| |||||  |||||| |  ||| |||||||||   ||||||||| ||| ||| |||| ||||||| |||||  |||||||||||||||||||||    
T  24157203 ggatcacgctacacatgtccttccccgctcctaatcacataccgcataacccggagacagttagggccaacacgcgct-tatataagggtgaacttgctt 24157301  T
Q  373 caccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||  |||||||||||||||||||| ||  | | |||||||||||||    
T  24157302 caccctcaaggtacacaatacttttcacaacacttcttagactttatctctcagttccatt 24157362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 433
Target Start/End: Complemental strand, 3586500 - 3586398
Alignment:
Q  330 cggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttc 429  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||  ||| |||| |||||||||||    
T  3586500 cggttatgaccaacgcgcgc-ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttc 3586402  T
Q  430 catt 433  Q
    ||||    
T  3586401 catt 3586398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 18772365 - 18772296
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctt 420  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||    
T  18772365 ctatataagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaacactttctacacactctt 18772296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 433
Target Start/End: Complemental strand, 29138103 - 29137936
Alignment:
Q  266 cgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaa 365  Q
    ||||| ||||| |||||||| |||| ||||| || |||||||||| ||| ||||||||||| || ||||||| ||||| || || | |||||  |||| |    
T  29138103 cgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcggagatggttatgaccaacgcgtgc-ccatatagaggtgga 29138005  T
Q  366 cttgcttcaccctcaaggtaca-catcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||| |||  ||||||   ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  29138004 cttgcttcactctcggggtacattctcactttccacaacatttcttacacactctttctcagttgcatt 29137936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 36267615 - 36267533
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||| |||  ||||||||||||||||||| ||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcatt 36267533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 24319029 - 24318977
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  24319029 ctatataagggtgaacttgcttcaccctcaatgtacacaacacttttcacaac 24318977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 24499903 - 24499824
Alignment:
Q  354 tataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||| ||||||    ||||||||||||||| ||  |||||||||||||||| |||||||    
T  24499903 tataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccatt 24499824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 433
Target Start/End: Complemental strand, 12169074 - 12169008
Alignment:
Q  367 ttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||| |  ||||||||||||||||||  |||||||||||||| |||||||||    
T  12169074 ttgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccatt 12169008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 27846512 - 27846575
Alignment:
Q  370 cttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||  ||||||| ||||||||||  |||| ||| |||||||||||||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccatt 27846575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 19919040 - 19919122
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| ||||  |||||||| ||||||||||    ||||||||||||||||||  |||| ||||||||||| |||||||    
T  19919040 ctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccatt 19919122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 45258126 - 45258208
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||  |||||||||||||||||||    ||||||||||||||||||   ||||| ||||||| |||| ||||    
T  45258126 ctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcatt 45258208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 29743947 - 29744035
Alignment:
Q  221 gagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatca 309  Q
    |||||||||| ||||||| ||||||  ||||   ||||||||  |||||| |||||||||||||| ||||||| || || |||||||||    
T  29743947 gagcacgccagcttgcgtgcaccgtgccacacgggagcgcgctctcgcgctaggatcaccctacacgtgtcctgctccgtccctaatca 29744035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 23257898 - 23257851
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttc 398  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||    
T  23257898 ctatataagggtgaccttgattcaccctcaaggtacaattcacttttc 23257851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 20120510 - 20120382
Alignment:
Q  304 taatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    ||||||| |||||||||||   | |||| ||||| ||||| ||| | |||||||||| || ||||| || ||||||||||||    |||||| ||||| |    
T  20120510 taatcacacgccgcataacctagagacgattatgaccaacacgcac-ctatataaggatggacttgttttaccctcaaggtatgattcacttatcacacc 20120412  T
Q  404 acttcttacacactctttctcagttccatt 433  Q
    ||||   |||||||||||||||||| ||||    
T  20120411 actttccacacactctttctcagtttcatt 20120382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 45715111 - 45715030
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||| ||||||||  | |||||||| ||||||||    ||| ||||||| |||||| |||||||||||||||||||| ||||    
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcatt 45715030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 18770393 - 18770357
Alignment:
Q  389 atcacttttcacaacacttcttacacactctttctca 425  Q
    |||||||||||||||||||  ||||||||||||||||    
T  18770393 atcacttttcacaacactttctacacactctttctca 18770357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 220 - 433
Target Start/End: Complemental strand, 379963 - 379751
Alignment:
Q  220 ggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcat 319  Q
    |||||| |||| ||||||| ||||||  |||| | |||||||||||| |   |||||||||||||| ||||||| || || || ||||||| ||||||||    
T  379963 ggagcatgccagcttgcgtgcaccgtgccacacaggagcgcgccttcacaagaggatcaccctacacgtgtcctgctccgtccataatcacacgccgcat 379864  T
Q  320 aactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 419  Q
    || || | || ||||||| |||||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  379863 aattcagagatggttatgaccaacatgcgc-ctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 379765  T
Q  420 ttctcagttccatt 433  Q
    ||||||||||||||    
T  379764 ttctcagttccatt 379751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 120985 - 121067
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  120985 ctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccatt 121067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 217 - 433
Target Start/End: Original strand, 23728661 - 23728876
Alignment:
Q  217 aagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccg 316  Q
    |||||||||| ||| ||||||| || |||  |||| | ||| |||||||| || ||||||||||||||| ||||||| ||  | ||||||||||  ||||    
T  23728661 aagggagcacaccagcttgcgtgcatcgtgtcacacaggagtgcgccttcacggaaggatcaccctacacgtgtcctgctctgtccctaatcacatgccg 23728760  T
Q  317 cataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacac 416  Q
    ||||| | |  ||||||||||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23728761 cataatttgaagacggttatggccaacgtgcgc-ctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacac 23728859  T
Q  417 tctttctcagttccatt 433  Q
    ||||||||| |||||||    
T  23728860 tctttctcatttccatt 23728876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 285 - 433
Target Start/End: Original strand, 4601396 - 4601543
Alignment:
Q  285 atgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggt 384  Q
    |||||||||||| ||| ||||||||| || |||||||| ||| ||||| |||| ||||  |||||| ||||||||||||||||||||||||||||||||     
T  4601396 atgtgtcctactccgcacctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcg-tatataagggtgaacttgcttcaccctcaaggg 4601494  T
Q  385 acacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||  ||||||| ||||| ||||||| | |||||||||| ||||    
T  4601495 acacatcaaatttcacagcacttattacacattatttctcagtttcatt 4601543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 433
Target Start/End: Complemental strand, 25408348 - 25408131
Alignment:
Q  215 ttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgc 314  Q
    |||||||||||||||| ||||| | ||||||  |||| | |||| ||||| | |||||||||||  |||||  |||||| |  |||  |||||||| |||    
T  25408348 ttaagggagcacgccagcttgcctgcaccgtgccacagaggagcacgcctcctcgcaaggatcatgctacacatgtccttccccgcttctaatcacacgc 25408249  T
Q  315 cgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacac 414  Q
    |  ||||| ||| ||| ||||||  |||  | ||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25408248 cttataacccggagacagttatgaacaaaacacgc-ctatgaaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttacac 25408150  T
Q  415 actctttctcagttccatt 433  Q
    ||||| | |||||| ||||    
T  25408149 actctctttcagtttcatt 25408131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 433
Target Start/End: Complemental strand, 12177578 - 12177421
Alignment:
Q  275 atcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttca 374  Q
    ||||||||||| ||||||| |  |  |||||||||   |||||||||||||| ||| |||||| ||||  ||| | |||||||||| ||||||||||||     
T  12177578 atcaccctacacgtgtcctccaccatccctaatcaaatgccgcataactcggagacagttatgcccaatgcgcac-ctatataaggttgaacttgcttcc 12177480  T
Q  375 ccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
     |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||    
T  12177479 tcctcaaggtataattcacttttcacaacactttctacacactctttctcagttccatt 12177421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 213 - 433
Target Start/End: Original strand, 16299420 - 16299630
Alignment:
Q  213 atttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgc 312  Q
    |||||||| || ||||||||| | || ||| |||  ||| | ||||||| || ||||  ||||||||||||| |||||||| || || | ||||| || |    
T  16299420 atttaaggaagtacgccatctcgtgtgcactgtacaacacaagagcgcgtctacgcgtgaggatcaccctacttgtgtcctgctccgtctctaattacac 16299519  T
Q  313 gccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttac 412  Q
    |||||||||| ||  |||| ||||||||||| | ||  |||||||||||||||||||||||       | |||||||||| |||||||||||||||||||    
T  16299520 gccgcataacccg--gacgattatggccaacacacg-tctatataagggtgaacttgcttc-------atgtacacatcatttttcacaacacttcttac 16299609  T
Q  413 acactctttctcagttccatt 433  Q
     ||||||||||||||| ||||    
T  16299610 gcactctttctcagtttcatt 16299630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 21098820 - 21098876
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 407  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  21098820 ctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcataacactt 21098876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 21682564 - 21682632
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 419  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  21682564 ctatataagggtgaatttgcgtcaccctcaaggtacacattacttttcacaatatttcttacacactct 21682632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 1659763 - 1659845
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||| ||||| |||| ||    |||||||||||||||||||||||||| |||||||||| ||||||    
T  1659763 ctatataagggtgaacttgctccacccacaagatatttctcacttttcacaacacttcttacacattctttctcagatccatt 1659845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 395
Target Start/End: Original strand, 14254847 - 14255060
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||||||||||||||   ||||| ||   |||||||  ||| || ||| ||||||| ||||||  |||| | |||| |||  |||||| |||||||||    
T  14254847 gtggccaaacttacaccgttttaaggctttgcatttaaaagagtacaccagcttgcgtgcaccgtgccacacaggagcacgctatcgcgcgaggatcacc 14254946  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
    |||||  ||||| |||  | |||||||||  |||||||||||  || ||  |||||| ||||  || || ||||||||||||||||||| ||||||||||    
T  14254947 ctacacatgtccaactctgtccctaatcatacgccgcataacctggagaaagttatgaccaaagcgtgc-ctatataagggtgaacttgtttcaccctca 14255045  T
Q  381 aggtacacatcactt 395  Q
    ||||||||| |||||    
T  14255046 aggtacacaacactt 14255060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 3590944 - 3590891
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctc-aaggtacacatcacttttcacaac 403  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3590944 ctatataagggtgaacttgcttcaccctcaaaggtacacaacacttttcacaac 3590891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 34273204 - 34273125
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttcc 430  Q
    ||||||||||| ||  |||||||||||||||||||    ||||||| ||||||||||  |||||||||||||||||||||    
T  34273204 ctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttcc 34273125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 48637704 - 48637612
Alignment:
Q  302 cctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgc-tatataagggtgaacttgcttcaccctcaaggtacacatcactt 395  Q
    ||||||||| ||||||||||| ||| |||||||||| |  ||  || ||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  48637704 cctaatcacacgccgcataacacggagacggttatgcc--acgagcccgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 48637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 430
Target Start/End: Complemental strand, 52565744 - 52565618
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    ||||||||||  || ||||||||||| |||| ||||| ||||| |||   | |||||||| ||||||||||||||||||||| ||    |||||||||||    
T  52565744 ccctaatcacatgctgcataactcggagacgattatgaccaacacgc---caatataaggatgaacttgcttcaccctcaagttatgattcacttttcac 52565648  T
Q  401 aacacttcttacacactctttctcagttcc 430  Q
    |||||||  | | |||||||| ||||||||    
T  52565647 aacactttctgcgcactctttttcagttcc 52565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 26977857 - 26977775
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| || |||||||||||||||||||    ||| ||||||||| ||||  ||||||||||||||| ||||||||    
T  26977857 ctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccatt 26977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 16050511 - 16050430
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccat 432  Q
    |||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||||||||||||||||||||    
T  16050511 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 16050430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 433
Target Start/End: Complemental strand, 5671848 - 5671805
Alignment:
Q  390 tcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  5671848 tcacttttcacaacactttctacacactctttctcagttccatt 5671805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 22414892 - 22414810
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||| |||| ||||||||||||||||||||| ||    ||||||||||||||||||  |||||||| ||| |||||| ||||    
T  22414892 ctatacaaggatgaacttgcttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcatt 22414810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 23280237 - 23280316
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||| ||||||||||||||||||||| || |    |||||||||||||||||   ||||||| ||||||||||||||||    
T  23280237 tatataaaggtgaacttgcttcaccctcatggcattattcacttttcacaacact--atacacacactttctcagttccatt 23280316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 33101501 - 33101563
Alignment:
Q  371 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| |||   ||||||||||||||||||  |||||||| |||||||||||||||    
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccatt 33101563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 433
Target Start/End: Original strand, 14255051 - 14255086
Alignment:
Q  398 cacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14255051 cacaacacttcttacacactctttctcagtttcatt 14255086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 16030512 - 16030430
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||   | ||||| |||||||||||    ||||||||||||||||||  |||||||||||  |||||||||||    
T  16030512 ctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccatt 16030430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 433
Target Start/End: Original strand, 15741976 - 15742209
Alignment:
Q  199 ccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcg-ccttcgcgcaaggatcaccctacatgtgtcctactt 297  Q
    |||||||||| |||||  || |||||||||||  |||||| ||| ||  |||| | ||||||| || |||  |||||||||||||||| ||||| | ||     
T  15741976 ccttaagacttcacatccaaaggagcacgccagtttgcgtgcactgtgccacacaggagcgcgtccctcgtacaaggatcaccctacacgtgtcttgct- 15742074  T
Q  298 cgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcactttt 397  Q
    || || ||||||| ||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||||||||  |||||||||||||||||||||    
T  15742075 cgtccttaatcacacgccgcataacccggagacggttatggccaacacgcgc-ctatataagggtgaatttgcttcagtctcaaggtacacatcactttt 15742173  T
Q  398 cacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||| |||||||||||||||    
T  15742174 cacaacacttcttacacactttttctcagttccatt 15742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 181 - 433
Target Start/End: Original strand, 14601820 - 14602071
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| ||||||  | || |  ||| | ||| | || | ||||| ||    
T  14601820 gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgcc 14601919  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
     |||| ||||||| |  ||| ||||||||| ||||||||||| ||| ||| ||||||  |||| | || ||||||||||| |||||||||||||||||||    
T  14601920 ttacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacg-gctatataaggatgaacttgcttcaccctca 14602018  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||| ||||    
T  14602019 aggtacacaacacttttcacaacacttcttacacactctctttcagtttcatt 14602071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 15514535 - 15514617
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  15514535 ctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccatt 15514617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 192 - 433
Target Start/End: Original strand, 16012288 - 16012527
Alignment:
Q  192 tacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc 291  Q
    |||||| |||||||||| | ||  ||||||| || |||| |||| || ||||||  | || | ||||||||  ||||  ||||||||||||||| ||||     
T  16012288 tacaccgccttaagacttcgcacctaagggaacatgccaacttgtgtgcaccgtgccgcacaggagcgcgctctcgcataaggatcaccctacacgtgtt 16012387  T
Q  292 ctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatc 391  Q
    || || || | |||||||| |||||||||||||||  ||| ||||  ||||| ||||| |||||||||||||||||||||||||| ||||| |||| |||    
T  16012388 ctgctccgtcactaatcacacgccgcataactcggatacgattattaccaacgcgcgc-ctatataagggtgaacttgcttcacc-tcaagatacatatc 16012485  T
Q  392 acttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||| ||||||  ||||||||||||||| |||||||||||||    
T  16012486 acttctcacaatgcttcttacacactctatctcagttccatt 16012527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 5518689 - 5518579
Alignment:
Q  318 ataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacact 417  Q
    ||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |    
T  5518689 ataacccggagacggttatgcccaacacgcgc-ctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacatt 5518591  T
Q  418 ctttctcagttc 429  Q
    || |||||||||    
T  5518590 ctctctcagttc 5518579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 433
Target Start/End: Complemental strand, 19643903 - 19643737
Alignment:
Q  266 cgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaa 365  Q
    ||||| ||||||||| || |||||||||    || |||||||| | ||||||||||||| | |||||||||   |||| | ||| |||||||||||||||    
T  19643903 cgcgcgaggatcaccttatatgtgtcctctaccgtccctaatctcacgccgcataactcagagacggttatcctcaacgcacgc-ctatataagggtgaa 19643805  T
Q  366 cttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||| |||||||||||||||    ||||||||||||| ||||  ||||||||||||||||||||||||    
T  19643804 cttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccatt 19643737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 433
Target Start/End: Original strand, 1638214 - 1638374
Alignment:
Q  272 aggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgc-tatataagggtgaacttgc 370  Q
    |||||||| ||||| ||||||| |  ||| ||||||||   |||||||||| ||| |||||||||| |  ||  |||| | |||||||||||||||||||    
T  1638214 aggatcacgctacacgtgtccttccccgctcctaatcatatgccgcataacccggagacggttatgcc--acgagcgcacctatataagggtgaacttgc 1638311  T
Q  371 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||| ||||||||  ||||||||||| ||  ||| |||||||||||||    
T  1638312 ttcaccctcaaggtacacaacacttttcttaacacttcttagactttctctctcagttccatt 1638374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 13896453 - 13896532
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttcc 430  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||| ||| | ||||||||    
T  13896453 ctatataagggtgaactttctttaccctcaaggtacacatcactttccacaacacttcttatacaatctctttcagttcc 13896532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 12683937 - 12683820
Alignment:
Q  315 cgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacac 414  Q
    |||||||||||| ||||||||||   ||  ||||| ||| |||||||||||||||||||||||| ||||||    ||||||||||||||||||  |||||    
T  12683937 cgcataactcggagacggttatgcttaatgcgcgc-ctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacac 12683839  T
Q  415 actctttctcagttccatt 433  Q
    |||||||||||||| ||||    
T  12683838 actctttctcagtttcatt 12683820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 47253394 - 47253312
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||  | |||||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||||    
T  47253394 ctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccatt 47253312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 2674462 - 2674616
Alignment:
Q  265 tcgcgcaaggatcaccctacatgtgtcct---acttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataaggg 361  Q
    |||||| |||||||||||||| |||||||   |||  | |||||||||| ||||||| ||  ||| ||||||||||  |||| |||||  ||||||||||    
T  2674462 tcgcgcgaggatcaccctacacgtgtcctctaact--gtccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgct-tatataaggg 2674558  T
Q  362 tgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactct 419  Q
    ||||||| ||||| ||||||||||    ||||||||||||||||||  ||||||||||    
T  2674559 tgaacttacttcatcctcaaggtatgattcacttttcacaacactttctacacactct 2674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 18463965 - 18463854
Alignment:
Q  302 cctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 401  Q
    ||||||||  ||||||||||| ||| |||||||||| |  |  ||||| |||||||||| |||| ||| |||||||||||| |||||| |||||||||||    
T  18463965 cctaatcatacgccgcataacccggagacggttatgccacaagcgcgc-ctatataaggatgaaattgtttcaccctcaagatacacaacacttttcaca 18463867  T
Q  402 acacttcttacac 414  Q
    ||||| |||||||    
T  18463866 acactccttacac 18463854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 19564078 - 19564026
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  19564078 ctatataacggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 19564026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 25066261 - 25066201
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttctta 411  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  25066261 ctatataagggtaaacttgcttcaacctcaaggtacacaacacttttcacaacacgtctta 25066201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 29157219 - 29157137
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||| ||||||| ||||||||    ||||||| ||||||||||  |||||||| |||||||||||||||    
T  29157219 ctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccatt 29157137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 17110814 - 17110756
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttct 409  Q
    |||| ||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||    
T  17110814 ctatgtaagggtgaacttgcttcaccctcaagatacacaatacttttcgcaacacttct 17110756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 433
Target Start/End: Complemental strand, 19809798 - 19809736
Alignment:
Q  371 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||| |  ||||||||||||||||||  |||||||||||||| |||| ||||    
T  19809798 ttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcatt 19809736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 12415552 - 12415500
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||||||| ||| |||||||| ||||||| ||||||| |||||    
T  12415552 ctatataagggtgaacttactttaccctcaaagtacacaacactttttacaac 12415500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 255 - 428
Target Start/End: Original strand, 6739 - 6911
Alignment:
Q  255 gagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctat 354  Q
    ||||||||||| | ||||||||   ||||||||||||||  | |  |||||||||| |||||||||||  || ||||||||||||||||  |||| ||||    
T  6739 gagcgcgcctttgtgcaaggattgacctacatgtgtcctgatccatccctaatcacacgccgcataacctggagacggttatggccaacgtgcgc-ctat 6837  T
Q  355 ataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6838 acaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactcgttctcagtt 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 248 - 433
Target Start/End: Original strand, 14859971 - 14860155
Alignment:
Q  248 cacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgc 347  Q
    |||||| |||||  || |||||||||||||||| |||| ||||||| ||  | |||||||||  |||| ||||||  || |||||||||| |  |  |||    
T  14859971 cacataggagcggaccctcgcgcaaggatcaccatacacgtgtcctgctctgtccctaatcatacgcctcataacctggagacggttatgacttaagcgc 14860070  T
Q  348 gcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14860071 gc-ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccatt 14860155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 269 - 433
Target Start/End: Complemental strand, 12516383 - 12516220
Alignment:
Q  269 gcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaactt 368  Q
    ||||||||||||||||| ||||||| || || ||||||||||  | |||||||  ||| |||||||||||||||  | | | |||||||| |||||||||    
T  12516383 gcaaggatcaccctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaaggcacac-ctatataaaggtgaactt 12516285  T
Q  369 gcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  12516284 gcttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccatt 12516220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 433
Target Start/End: Original strand, 12731366 - 12731617
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||||||| |||||| | ||||  |||| | ||| | |||||||| || ||| | | ||||||  |||| | ||| ||||| |||||| || ||||||    
T  12731366 gtggccaaacatacaccgcattaaagctccgcttttgaaggagcacgtcagcttacatgcaccgtgccacacaggagtgcgccctcgcgcgagaatcacc 12731465  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
     |||||||||||||||  | ||| |||||| ||||||||||| ||  ||| |||||| ||| | | | |  |||||||||||||||||||||||||||||    
T  12731466 ttacatgtgtcctactctgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacaca-tatataagggtgaacttgcttcaccctca 12731564  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  12731565 aggttcacatcacttttcacaacacttcttatacactctttctcagttccatt 12731617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 428
Target Start/End: Complemental strand, 25496210 - 25495978
Alignment:
Q  195 accaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtccta 294  Q
    ||||||||||||||   ||| ||||||||||| ||| ||||| | ||||    |||| | |||||||||  || || ||||||| || ||| ||||||||    
T  25496210 accaccttaagactttgcatctaagggagcacaccagcttgcatgcaccaccccacacaagagcgcgcccccgagcgaggatcatccaacacgtgtccta 25496111  T
Q  295 cttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcact 394  Q
    |  ||  ||||||||| ||||||||||| ||| ||||||||||  ||||  |||| |||||||||||||||||||||||||| | |||||||||||||||    
T  25496110 caccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgc-ctatataagggtgaacttgcttcacctttaaggtacacatcact 25496012  T
Q  395 tttcacaacacttcttacacactctttctcagtt 428  Q
    |||  |||| ||||||||||||||||||||||||    
T  25496011 tttttcaactcttcttacacactctttctcagtt 25495978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 433
Target Start/End: Original strand, 431212 - 431372
Alignment:
Q  272 aggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgct 371  Q
    ||||||||| |||| ||||||| || |  |||||||||| ||| ||||||| ||  ||| ||||||  |||| ||||| ||||||||||||| || ||||    
T  431212 aggatcaccttacacgtgtcctcctccatccctaatcacacgctgcataacccgcagacagttatgagcaacacgcgc-ctatataagggtggacatgct 431310  T
Q  372 tcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| |||  |||||||||||| |||||   || ||||||||||||||||||||    
T  431311 tcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccatt 431372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 433
Target Start/End: Complemental strand, 1770992 - 1770860
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacac-atcacttttca 399  Q
    |||||||||  |||||||||| |||| ||||||||||  |||| ||| | ||||||||||| |||||||||||| ||||||||  ||  |||||||||||    
T  1770992 ccctaatcatacgccgcataattcggagacggttatgcacaacgcgcac-ctatataagggcgaacttgcttcatcctcaaggcgcatgatcacttttca 1770894  T
Q  400 caacacttcttacacactctttctcagttccatt 433  Q
    ||||||||  ||||||||||| ||||||||||||    
T  1770893 caacactttctacacactcttcctcagttccatt 1770860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 16704539 - 16704445
Alignment:
Q  330 cggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctca 425  Q
    |||||||  ||||| ||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||  ||||| ||||||||||    
T  16704539 cggttatcaccaacgcgcgc-ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctca 16704445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 414
Target Start/End: Original strand, 20122676 - 20122816
Alignment:
Q  273 ggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgctt 372  Q
    ||||||| ||||||||||||| |   || | ||||||  ||||||||||| ||| |||||||||  |  |  ||||| |||||||||||||||||| |||    
T  20122676 ggatcacactacatgtgtccttcccggctcttaatcatacgccgcataacccggagacggttattccataagcgcgc-ctatataagggtgaactttctt 20122774  T
Q  373 caccctcaaggtacacatcacttttcacaacacttcttacac 414  Q
    ||||||||||||||||| |||||| ||||| ||||| |||||    
T  20122775 caccctcaaggtacacaacactttccacaaaacttcatacac 20122816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 28715465 - 28715544
Alignment:
Q  354 tataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||  ||| |||||||||||||||    ||||||||||||||||||  ||||||||||||||||||||||||    
T  28715465 tataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccatt 28715544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 9801058 - 9801136
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttc 429  Q
    ||||||||||||||  |||||||||||||||||||    ||||||||||||||||||  ||||||||||||||| ||||    
T  9801058 ctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttc 9801136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 12108585 - 12108500
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtaca 387  Q
    ||||||||||  |||||||||| ||| | | |||||| ||||| || || |||||||||||||||||||||||||||||||||||||    
T  12108585 ccctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgc-ctatataagggtgaacttgcttcaccctcaaggtaca 12108500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 30607045 - 30606963
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||  ||| |||||||||||||||| |  ||||||||||||||||||  ||| |||||||||||| |||||||    
T  30607045 ctatataagggtggccttacttcaccctcaaggtataattcacttttcacaacactttctactcactctttctcaattccatt 30606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 17143724 - 17143805
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||  ||| ||||||| |||||||    ||||||||||||||||||  ||||||||||||||||||||||||    
T  17143724 tatataagggtgatgttgtttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccatt 17143805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 9781514 - 9781562
Alignment:
Q  385 acacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  9781514 acacatcacttttcacaacacttcttacacactctttttcagttacatt 9781562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 12257039 - 12256952
Alignment:
Q  255 gagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaa 342  Q
    ||||||||| |||||||||| |||| ||||| ||||  |  |||| |||||||||| ||||||||||||||  |||||||||||||||    
T  12257039 gagcgcgccatcgcgcaagggtcacactacacgtgttatgtttcgtccctaatcacacgccgcataactcgaagacggttatggccaa 12256952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 20118951 - 20119002
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaa 402  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  20118951 ctatataagggtgaacttgcttcaccctcaaggtacacaatactttccacaa 20119002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 12252071 - 12252031
Alignment:
Q  385 acacatcacttttcacaacacttcttacacactctttctca 425  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12252071 acacatcacttttcacaacaattcttacacactctttctca 12252031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 17396840 - 17396796
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcactt 395  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  17396840 ctatataagggtgaacatgcttcaccctcaaggtacacaacactt 17396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 20622524 - 20622469
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 407  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||| |||||    
T  20622524 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactt 20622469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 7835464 - 7835625
Alignment:
Q  266 cgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaa 365  Q
    ||||| |||||| |||| || ||||||| || ||  ||| ||||| || |||||||| | | ||||||||||| ||||  |  | ||||| |||| ||||    
T  7835464 cgcgcgaggatcgccctgcacgtgtcctcctccgttcctgatcacacgtcgcataacccagagacggttatggacaacgtgttc-ctataaaaggatgaa 7835562  T
Q  366 cttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    ||||||||| | ||||| |||  |||||||||||||||||||  |||| ||| ||||||||||    
T  7835563 cttgcttcatcatcaagatacgtatcacttttcacaacactttctacatactatttctcagtt 7835625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 21342261 - 21342343
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||| | ||| |||||||||||| |||    ||||||||||||||||||  || ||||||||| |||||||||||    
T  21342261 ctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccatt 21342343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 2311812 - 2311882
Alignment:
Q  355 ataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctca 425  Q
    ||||||||||  |||||||||||||||||||    |||| |||||||||||||  |||||| |||||||||    
T  2311812 ataagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctca 2311882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 28723748 - 28723830
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||| |||  ||| ||||||||| || |||   ||||||||||||||| ||  |||||||||||||| |||||||||    
T  28723748 ctatataaggatgacattgtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccatt 28723830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 433
Target Start/End: Complemental strand, 23172 - 22921
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    ||||||| |||| |||| |||||||||||||||   || ||||||||||| ||||| |   ||||    || ||||| ||||| |||| ||||||| |||    
T  23172 gtggccagacttgcaccgccttaagactccacacccaaaggagcacgccagcttgcatggtccgttctgcacatgagtgcgccctcgctcaaggattacc 23073  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
    |||||  |||||| || || |||||||||| | |||||||||  || || ||||||  ||||| ||| | ||| ||||||||||||||||||||||||||    
T  23072 ctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcac-ctacataagggtgaacttgcttcaccctca 22974  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  22973 aggtacacgtcacttttcacaacacttcttacacacgatttctcagttccatt 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 10889 - 10971
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  10889 ctatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccatt 10971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 181 - 433
Target Start/End: Complemental strand, 215558 - 215307
Alignment:
Q  181 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 280  Q
    |||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| ||||||  | || |  ||| | ||| | || | ||||| ||    
T  215558 gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgcc 215459  T
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
     |||| ||||||| |  ||| ||||||||| ||||||||||| ||| ||| ||||||  |||| | || ||||||||||| |||||||||||||||||||    
T  215458 ttacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacg-gctatataaggatgaacttgcttcaccctca 215360  T
Q  381 aggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||| ||||    
T  215359 aggtacacaacacttttcacaacacttcttacacactctctttcagtttcatt 215307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 259 - 428
Target Start/End: Complemental strand, 5246 - 5078
Alignment:
Q  259 gcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataa 358  Q
    ||||| |||||| || |||||| ||||||||||||||| || ||| |||||| ||||||||||  ||  ||||||||||  || | | | | ||||||||    
T  5246 gcgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataagccgaagacggttatgatcagcgcacac-ctatataa 5148  T
Q  359 gggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||    
T  5147 gggtgaacttgcttcaccctcaaggttcacgtcacttttcacaacacttcttacacaacctttctcagtt 5078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 301 - 433
Target Start/End: Original strand, 167 - 299
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacaca-tcacttttca 399  Q
    |||||||||| | | ||||||| ||| ||| |||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||   ||||||||||    
T  167 ccctaatcacacactgcataacccggagacagttatgaccaacgcgcgc-ctagataagggtgaacttgcttcaccctcaaggtacattctcacttttca 265  T
Q  400 caacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||||||||||||||||||||||    
T  266 caacacttcttacacactctttctcagttccatt 299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 433
Target Start/End: Original strand, 11776140 - 11776299
Alignment:
Q  273 ggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgctt 372  Q
    ||||||||||||||||||| | || |  || ||||||| |||||||| |  ||| |||||||||| ||||| ||| | |||||||| |||||||||| ||    
T  11776140 ggatcaccctacatgtgtcatgctccatccttaatcacacgccgcattatccggagacggttatgcccaacgcgcac-ctatataaaggtgaacttgttt 11776238  T
Q  373 caccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||    
T  11776239 caccctcaaggtacatatcacttttcccaacactccttaaacactctttctcagttccatt 11776299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 433
Target Start/End: Original strand, 24576495 - 24576639
Alignment:
Q  288 tgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtaca 387  Q
    |||||| || ||| ||||||||| || ||||||||  || | ||||||||  |||| || || |||||||||||||||||| ||||||||||||||||||    
T  24576495 tgtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgc-ctatataagggtgaacttccttcaccctcaaggtaca 24576593  T
Q  388 catcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||| ||||||||||||||||||||||||||| || | |||||||||    
T  24576594 cattacttttcacaacacttcttacacactcatttttagttccatt 24576639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 23243900 - 23243819
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||    
T  23243900 tatataagagtgaacttgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttccatt 23243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 433
Target Start/End: Original strand, 3459390 - 3459540
Alignment:
Q  281 ctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctca 380  Q
    ||||||||||||| ||||| || ||||||| ||||||||||| | | |||||||| | ||||| ||||| |||||||||||||||||||||||| |||||    
T  3459390 ctacatgtgtcctccttcgtccttaatcacacgccgcataacccagagacggttacgaccaac-cgcgc-ctatataagggtgaacttgcttca-cctca 3459486  T
Q  381 aggtacacatcacttttca-caacacttcttacacactctttctcagttccatt 433  Q
    ||||||   | |||||||| ||||||||  ||||||||||| ||||||||||||    
T  3459487 aggtacgatttacttttcaccaacactttctacacactcttgctcagttccatt 3459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 21416901 - 21416773
Alignment:
Q  304 taatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||  |||||||||| ||| |||||||||| ||||| ||| | ||||| |||||||||||||||||||||| |||||||   ||| ||||||||||    
T  21416901 taatcacaggccgcataacccggagacggttatgcccaacgcgccc-ctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaac 21416803  T
Q  404 acttcttacacactctttctcagttccatt 433  Q
    ||||  ||||||||||||||||||| ||||    
T  21416802 actttctacacactctttctcagtttcatt 21416773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 4565368 - 4565427
Alignment:
Q  352 tatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttctta 411  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4565368 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 4565427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 20055680 - 20055623
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttct 409  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20055680 ctatataaggatgaacttgcttcaccct-aaggtacacatcacttttcacaacacttct 20055623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 433
Target Start/End: Original strand, 17698210 - 17698341
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    |||||||||| ||||||  || |||  ||||||||||  | || ||||| ||||||| |||||  |||||||||||||||| ||| |  |||||||||||    
T  17698210 ccctaatcacacgccgctaaattcgaagacggttatgctcgacgcgcgc-ctatatatgggtggccttgcttcaccctcaaagtataattcacttttcac 17698308  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
    |||||||  ||||||||||||||| ||||||||    
T  17698309 aacactttctacacactctttctcggttccatt 17698341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 6928069 - 6928146
Alignment:
Q  356 taagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||| ||  |||||||||||||||    ||||||||||||||||||  ||||||||||||||||||||||||    
T  6928069 taagggtgaaattaattcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccatt 6928146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 30477758 - 30477681
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    ||||||||||||||  || ||||||||||||||||    ||||||||||||||||||  |||||||||||||||||||    
T  30477758 ctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtt 30477681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 24507574 - 24507492
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||| |||||||| | ||||||||||||||||    ||||||||||||||||||  || ||||||||||||| |||||||    
T  24507574 ctatatatgggtgaacctacttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccatt 24507492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 433
Target Start/End: Original strand, 26916823 - 26916954
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    |||||||||| ||||||| |||  || | |||||||   |||| ||||| ||||||||||| ||  ||||||||  |||||||||    |||||||||||    
T  26916823 ccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgc-ctatataagggcgacattgcttcatgctcaaggtatgactcacttttcac 26916921  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
    |||||||  |||||||||| |||||||||||||    
T  26916922 aacactttctacacactctctctcagttccatt 26916954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 13754875 - 13754793
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||| ||||  | |||||||||||||||||    ||||||| ||||||||||  ||||||||||||||||||| ||||    
T  13754875 ctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaacactttctacacactctttctcagtttcatt 13754793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 18323060 - 18322982
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttc 429  Q
    |||||||||||||| ||||||||| |||||| |||    ||||||||||||||| ||  |||||| |||||||||||||    
T  18323060 ctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacacaatctttctcagttc 18322982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 14666818 - 14666866
Alignment:
Q  355 ataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  14666818 ataagggtgaactttcttcacccttaaggtacacaaaacttttcacaac 14666866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 23269400 - 23269316
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtac 386  Q
    ||||| |||| ||| ||| ||||||| |||||||||   |||| ||||| ||||||| ||||||  ||||||||||||||||||||    
T  23269400 ccctattcacacgctgcaaaactcggagacggttatcctcaacacgcgc-ctatatatgggtgacattgcttcaccctcaaggtac 23269316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 433
Target Start/End: Complemental strand, 5859981 - 5859850
Alignment:
Q  301 ccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcac 400  Q
    |||||||||| ||||||| ||  | | | |||||||  ||||| ||||| |||||||||||||| |||||||||  ||||||||||   |||||| |||     
T  5859981 ccctaatcactcgccgcaaaatccagaggcggttatttccaacgcgcgc-ctatataagggtgaccttgcttcaatctcaaggtacgattcacttctcaa 5859883  T
Q  401 aacacttcttacacactctttctcagttccatt 433  Q
    ||||||    ||||||| ||||| |||||||||    
T  5859882 aacactctcaacacactatttcttagttccatt 5859850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 16214780 - 16214713
Alignment:
Q  314 ccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaag 382  Q
    ||||||||| ||| |||||||||| |  |  ||||| |||||||||||||||||||||||||| |||||    
T  16214780 ccgcataacccggagacggttatgccacaagcgcgc-ctatataagggtgaacttgcttcaccttcaag 16214713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 432
Target Start/End: Complemental strand, 40959 - 40832
Alignment:
Q  304 taatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||  |||||||||| ||| |||||||||| ||| | | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  40959 taatcacatgccgcataacccggagacggttatgaccagcgcacgc-ctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataac 40861  T
Q  404 acttcttacacactctttctcagttccat 432  Q
    ||||| ||||| |||| | ||||||||||    
T  40860 acttcctacactctctctttcagttccat 40832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 11719 - 11551
Alignment:
Q  260 cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataag 359  Q
    |||| |||||| || |||||| ||||||||||||||| || ||| |||||| ||||||||||| ||  ||| |||||| ||| | | | |  ||||||||    
T  11719 cgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacaca-tatataag 11621  T
Q  360 ggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||| |||||||||||||| |||||||||||||||||||   |||| |||||||||||||||||||||    
T  11620 ggtgaacttggttcaccctcaaggt-cacatcacttttcacaaca---cttatacactctttctcagttccatt 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 4398 - 4480
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| | |||||| ||||    
T  4398 ctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcatt 4480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 433
Target Start/End: Original strand, 15326 - 15486
Alignment:
Q  272 aggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgct 371  Q
    ||||||||| |||||||||||| ||| | ||||||||||  | |||||||  |||  ||||||||| | |||  || | |||||||||||||||||||||    
T  15326 aggatcaccttacatgtgtcctcctttgtccctaatcacatgtcgcataatccggacacggttatgactaacgtgcac-ctatataagggtgaacttgct 15424  T
Q  372 tcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||    ||||||||||||||||||  || | |||||||||||||||||||    
T  15425 tcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccatt 15486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 303 - 430
Target Start/End: Original strand, 20424 - 20550
Alignment:
Q  303 ctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaa 402  Q
    |||||||| |||  |||||||||| ||||| |||| ||||| ||||| ||||||| ||||||| ||  ||||||| ||||||||||||||||||||| ||    
T  20424 ctaatcacacgctacataactcggagacggctatgaccaacgcgcgc-ctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataa 20522  T
Q  403 cacttcttacacactctttctcagttcc 430  Q
    || ||  |||||||||||||||||||||    
T  20523 cattttctacacactctttctcagttcc 20550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 21592 - 21669
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagtt 428  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||    
T  21592 ctatgtaagggtgaatttgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtt 21669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 21441 - 21533
Alignment:
Q  199 ccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc 291  Q
    ||||||| || |||| |||||||||||||||| ||||| | || |||  |||| |||||| ||||| | |||| ||||||| ||||| |||||    
T  21441 ccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctacacgtgtc 21533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 42365 - 42309
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 407  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42365 ctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 42309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 433
Target Start/End: Complemental strand, 6463 - 6333
Alignment:
Q  302 cctaatcacgcgccgcataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 401  Q
    ||||||||| | || | |||| ||| ||||||||||  ||||  |||| |||||||||| |||||||||||||| ||||||||||   ||||||||||||    
T  6463 cctaatcacacaccacgtaacccggagacggttatgttcaacgtgcgc-ctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcaca 6365  T
Q  402 acacttcttacacactctttctcagttccatt 433  Q
    ||||||  |||||||| |||||||||||||||    
T  6364 acactttctacacactatttctcagttccatt 6333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 14039 - 13957
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||| ||||||||||||||||||||    |||||| |||||||||||  ||||||||||||||||||| ||||    
T  14039 ctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcatt 13957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 413
Target Start/End: Complemental strand, 9113 - 9029
Alignment:
Q  328 gacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttaca 413  Q
    |||||||||| ||||| || || |||||||||||||||| | || |||||||||||||||||| | ||||||||||||||||||||    
T  9113 gacggttatgaccaacgcgggc-ctatataagggtgaaccttctccaccctcaaggtacacataatttttcacaacacttcttaca 9029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 95784 - 95866
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    ||||||||||||||  |||||||||||| ||||||    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  95784 ctatataagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccatt 95866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 421
Target Start/End: Original strand, 73743 - 73846
Alignment:
Q  317 cataactcggtgacggttatggccaactcgcgcgctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacac 416  Q
    |||||||||| |||||||||  ||||| ||||| |||||||  ||||||||||||||||||| ||||||    | ||||||||||||||||  ||| |||    
T  73743 cataactcggagacggttatacccaacacgcgc-ctatatattggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcac 73841  T
Q  417 tcttt 421  Q
    |||||    
T  73842 tcttt 73846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 68776 - 68856
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatt 433  Q
    |||||||||||||| |||||||| |||||||||||    |||||||||||||||||  ||  | |||||||||||||||||||    
T  68776 ctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacact--ttctatactctttctcagttccatt 68856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 53247 - 53299
Alignment:
Q  351 ctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaac 403  Q
    |||||||||||||||||||||||| ||||  |||||||| ||||||| |||||    
T  53247 ctatataagggtgaacttgcttcaacctctgggtacacaacacttttaacaac 53299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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