View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_32 (Length: 424)
Name: NF15182_high_32
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 22379418 - 22379813
Alignment:
| Q |
11 |
cacagatacaatgacaaaggcgtaaaccgaggctaaatccaccacatgtgaagattgttacctgagctataacaagtggcatttccaacactttgtattg |
110 |
Q |
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| T |
22379418 |
cacagatacaatgacaaaggcgtaaaccgaggctaaatccaccacatgtgaagattgttacctgagctataacaagtggcatttccaacactttgtattg |
22379517 |
T |
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| Q |
111 |
ttcttcatttggaaatttgaatatcaatggttcccaagatggatttggagcagcaaaatcacctagttcagataaagctatgtttgatcttgcttcaacc |
210 |
Q |
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| T |
22379518 |
ttcttcatttggaaatttgaatatcaatggttcccaagatggatttggagcagcaaaatcacctagttcagataaagctatgtttgatcttgcttcaacc |
22379617 |
T |
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| Q |
211 |
attaacgctccttgttcttcttcttctccgaaaaatacttccagtttaccatttttcgtctctcttaaccttcccgagagagggtagtagggaaccaaaa |
310 |
Q |
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| T |
22379618 |
attaacgctccttgttcttcttcttctccgaaaaatacttccagtttaccatttttcgtctctcttaaccttcccgagagagggtagtagggaaccaaaa |
22379717 |
T |
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| Q |
311 |
cgtcagctagagcgcggccaagtatttccgcgaccggtttttggaaagacgtacttgaattgtctgattgataaaagtaaaccgtcggtgtgaaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22379718 |
cgtcagctagagcgcggccaagtatttccgcgaccggtttttggaaagacgtacttgaattgtctgattgataaaagtaaaccgtcggtgtgaaga |
22379813 |
T |
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