View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_37 (Length: 388)

Name: NF15182_high_37
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_37
NF15182_high_37
[»] chr1 (10 HSPs)
chr1 (129-342)||(12981376-12981589)
chr1 (129-344)||(45348276-45348491)
chr1 (270-343)||(45325765-45325838)
chr1 (254-341)||(39241555-39241643)
chr1 (129-197)||(52385822-52385890)
chr1 (129-197)||(39241699-39241764)
chr1 (129-190)||(45325643-45325704)
chr1 (129-197)||(27286305-27286373)
chr1 (10-44)||(12981674-12981708)
chr1 (10-44)||(45348157-45348191)
[»] chr4 (13 HSPs)
chr4 (129-344)||(20133263-20133478)
chr4 (129-343)||(55919395-55919609)
chr4 (129-344)||(47031467-47031671)
chr4 (129-344)||(42069054-42069258)
chr4 (129-344)||(15531219-15531435)
chr4 (129-342)||(45989618-45989820)
chr4 (129-217)||(28679488-28679576)
chr4 (254-343)||(24228277-24228366)
chr4 (129-189)||(42976479-42976539)
chr4 (129-197)||(27293087-27293155)
chr4 (129-197)||(4919155-4919223)
chr4 (9-44)||(28679661-28679696)
chr4 (10-44)||(20133563-20133597)
[»] chr3 (18 HSPs)
chr3 (129-343)||(39833239-39833453)
chr3 (129-327)||(5232816-5233014)
chr3 (130-342)||(20104177-20104389)
chr3 (129-344)||(53282146-53282362)
chr3 (144-342)||(36950181-36950380)
chr3 (129-344)||(29703544-29703760)
chr3 (253-344)||(29833269-29833360)
chr3 (254-347)||(12938392-12938485)
chr3 (257-344)||(33216791-33216878)
chr3 (129-189)||(31658828-31658888)
chr3 (129-197)||(50650400-50650468)
chr3 (129-197)||(12938542-12938610)
chr3 (9-44)||(5233097-5233132)
chr3 (9-44)||(20104473-20104508)
chr3 (10-44)||(39833120-39833154)
chr3 (130-189)||(29833424-29833483)
chr3 (134-197)||(33216668-33216731)
chr3 (299-336)||(34132932-34132969)
[»] chr8 (8 HSPs)
chr8 (129-342)||(531539-531752)
chr8 (129-344)||(30945461-30945677)
chr8 (144-344)||(3879490-3879691)
chr8 (253-342)||(13802812-13802901)
chr8 (130-189)||(13802689-13802748)
chr8 (10-44)||(531837-531871)
chr8 (299-336)||(9864153-9864190)
chr8 (15-44)||(30945348-30945377)
[»] chr7 (11 HSPs)
chr7 (129-342)||(45972278-45972491)
chr7 (129-342)||(29243235-29243446)
chr7 (129-342)||(47327797-47328010)
chr7 (129-344)||(34093971-34094175)
chr7 (129-343)||(6442491-6442694)
chr7 (254-339)||(29258386-29258471)
chr7 (129-197)||(19436813-19436881)
chr7 (9-44)||(47328093-47328128)
chr7 (10-44)||(45972576-45972610)
chr7 (129-197)||(29833953-29834021)
chr7 (15-44)||(29243530-29243559)
[»] chr2 (19 HSPs)
chr2 (129-343)||(17690458-17690672)
chr2 (129-344)||(15330587-15330803)
chr2 (129-343)||(14810123-14810336)
chr2 (129-337)||(16429724-16429932)
chr2 (129-344)||(37261705-37261912)
chr2 (129-344)||(37078800-37079015)
chr2 (144-344)||(7089077-7089278)
chr2 (144-337)||(33755093-33755287)
chr2 (130-197)||(18977120-18977187)
chr2 (256-345)||(18977221-18977310)
chr2 (9-44)||(37079098-37079133)
chr2 (10-44)||(14810004-14810038)
chr2 (10-44)||(15330888-15330922)
chr2 (10-44)||(16430017-16430051)
chr2 (10-44)||(37261586-37261620)
chr2 (129-197)||(14096397-14096465)
chr2 (12-44)||(17690757-17690789)
chr2 (254-342)||(14096252-14096340)
chr2 (12-40)||(18977002-18977030)
[»] scaffold0166 (2 HSPs)
scaffold0166 (129-342)||(30715-30928)
scaffold0166 (10-44)||(30596-30630)
[»] chr5 (13 HSPs)
chr5 (129-342)||(24788332-24788545)
chr5 (130-327)||(39884565-39884763)
chr5 (254-342)||(1828408-1828496)
chr5 (254-342)||(40313873-40313961)
chr5 (254-342)||(41413576-41413664)
chr5 (253-343)||(31482201-31482291)
chr5 (130-197)||(31482078-31482145)
chr5 (129-197)||(1828553-1828621)
chr5 (129-197)||(40314018-40314086)
chr5 (129-197)||(41413451-41413519)
chr5 (129-197)||(30625005-30625073)
chr5 (10-44)||(24788213-24788247)
chr5 (254-343)||(30624859-30624948)
[»] chr6 (4 HSPs)
chr6 (129-197)||(28138048-28138116)
chr6 (129-197)||(12938783-12938851)
chr6 (258-314)||(33694805-33694861)
chr6 (133-197)||(33694921-33694985)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 129 - 342
Target Start/End: Complemental strand, 12981589 - 12981376
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12981589 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 12981490  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12981489 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 12981390  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  12981389 tcatagaagctccc 12981376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 45348276 - 45348491
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45348276 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 45348375  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||    
T  45348376 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctgacttca 45348475  T
Q  329 ttatagaagctccctt 344  Q
    | ||||||||||||||    
T  45348476 tcatagaagctccctt 45348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 45325765 - 45325838
Alignment:
Q  270 ttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccct 343  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| || || |||||||||    
T  45325765 ttaaaatctgattggcccattcaaacgactgcactgaagaagtcattttcctgacttctttgtataagctccct 45325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 39241643 - 39241555
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggccc-attcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcc 341  Q
    |||||||||| || | |||||||||||||| ||| ||||||||||||||| | |||||||||||||||| ||||| | |||||||||||    
T  39241643 tctgacgtgttatcacttaaaatctgattgaccccattcaaacgacttcatcgaagaagtcattttcctaacttcttcatagaagctcc 39241555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 52385822 - 52385890
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||| | |||||| |||||||||    
T  52385822 catgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaa 52385890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 39241764 - 39241699
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||||||||||||||||||||| |||   || |||||||||||| ||||||||||||||||||    
T  39241764 catgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaa 39241699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 45325643 - 45325704
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatg 190  Q
    |||||||||||||| |||||||||||||||||||  || ||||||||||| |||||||||||    
T  45325643 catgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatg 45325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 27286373 - 27286305
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||||| |||||||  |||||||||    
T  27286373 catgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaa 27286305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 12981708 - 12981674
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  12981708 atgaagaagatgaaggaaagatgaagatgttgatt 12981674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 45348157 - 45348191
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  45348157 atgaagaagatgaaggaaagatgaagatgttgatt 45348191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 20133478 - 20133263
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20133478 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 20133379  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20133378 actacactgaaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 20133279  T
Q  329 ttatagaagctccctt 344  Q
    | ||||||||||||||    
T  20133278 tcatagaagctccctt 20133263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 129 - 343
Target Start/End: Original strand, 55919395 - 55919609
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55919395 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 55919494  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55919495 actacactggaacatgattagggtttttgatgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 55919594  T
Q  329 ttatagaagctccct 343  Q
    | |||||||||||||    
T  55919595 tcatagaagctccct 55919609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 47031467 - 47031671
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||           |||||| ||||||| ||| ||||||||    
T  47031467 catgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatg-----------tccttctacttacggtactgtagaccg 47031555  T
Q  228 cactacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    | |||||||| ||||| ||   | |||||||||||||| |  |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  47031556 c-ctacactgtaacataatgcagttttctgacgtgtcaatggttaaaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgacttc 47031654  T
Q  328 attatagaagctccctt 344  Q
     |  |||||||||||||    
T  47031655 ttcgtagaagctccctt 47031671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 42069054 - 42069258
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||           |||||| ||||||| ||| ||||||||    
T  42069054 catgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatg-----------tccttctacttacggtactgtagaccg 42069142  T
Q  228 cactacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    | |||||||| ||||||||   | |||||||||||||     |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  42069143 c-ctacactgtaacatgatgcagttttctgacgtgtctaggattaaaatctgattgacccattcaaacgactgcaccgaagaagtcattttcctgacttc 42069241  T
Q  328 attatagaagctccctt 344  Q
     | ||||||||||||||    
T  42069242 ttcatagaagctccctt 42069258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 15531219 - 15531435
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    ||||||||||  || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| ||||    
T  15531219 catgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaaccg 15531318  T
Q  228 cactacactggaacatgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgactt 326  Q
    | || ||||| ||||| ||  ||||| |||||||| |||| | || ||||||||||||  |||||||||||||||||  || |||||||||| |||||||    
T  15531319 c-ctgcactgtaacataatgcagggtatctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatttttctgactt 15531417  T
Q  327 cattatagaagctccctt 344  Q
    |    |||||||||||||    
T  15531418 ctccgtagaagctccctt 15531435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 45989618 - 45989820
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||           |||||| ||||||| ||| ||||||||    
T  45989618 catgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg-----------tccttctacttacggtactgtagaccg 45989706  T
Q  228 cactacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    | |||||||| ||||||||   | ||||||||||||      |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45989707 c-ctacactgtaacatgatgcagttttctgacgtgtataggattaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttc 45989805  T
Q  328 attatagaagctccc 342  Q
     |  |||||||||||    
T  45989806 ttcgtagaagctccc 45989820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 28679576 - 28679488
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgcta 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||||    
T  28679576 catgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaataaagtgttccttcccttacgcta 28679488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 24228277 - 24228366
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccct 343  Q
    |||||||||||||   || |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||    
T  24228277 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccct 24228366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 42976539 - 42976479
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcat 189  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  42976539 catgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcat 42976479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 27293155 - 27293087
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||||| |||||||| |||||||||    
T  27293155 catgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 27293087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 4919223 - 4919155
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    ||||||||||  ||||||||||||| |||||||| |||  ||||||||||||||||||| |||||||||    
T  4919223 catgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaa 4919155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 28679696 - 28679661
Alignment:
Q  9 gatgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  28679696 gatgaagaagatgaaggaaagatgaagatgttgatt 28679661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 20133597 - 20133563
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  20133597 atgaagaagatgaaggaaagatgaagatgttgatt 20133563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 129 - 343
Target Start/End: Original strand, 39833239 - 39833453
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39833239 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 39833338  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39833339 actacactgaaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 39833438  T
Q  329 ttatagaagctccct 343  Q
    | |||||||||||||    
T  39833439 tcatagaagctccct 39833453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 129 - 327
Target Start/End: Complemental strand, 5233014 - 5232816
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||  |||||||||    
T  5233014 catgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttcacttacggtattgtagaccgc 5232915  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    ||||||||| ||||| |||| | | ||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  5232914 actacactgtaacattattaagatctctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttc 5232816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 130 - 342
Target Start/End: Complemental strand, 20104389 - 20104177
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgca 229  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||  ||||||||||    
T  20104389 atgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaagtttttctttactaacggtattgtagaccgca 20104290  T
Q  230 ctacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcat 329  Q
    |||||||| ||||| |||||| ||||||||||||||| | ||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||| |    
T  20104289 ctacactgtaacattattaggatttctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttctt 20104190  T
Q  330 tatagaagctccc 342  Q
      |||||||||||    
T  20104189 cgtagaagctccc 20104177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 53282362 - 53282146
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    ||||||||||  || |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  ||||||| ||| ||||||||    
T  53282362 catgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaagttttccttttacttacggtactgtagaccg 53282263  T
Q  228 cactacactggaacatgatt-agggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgactt 326  Q
    | || |||   ||||| ||  ||||| ||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  53282262 c-ctgcacaataacataatgcagggtatctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgactt 53282164  T
Q  327 cattatagaagctccctt 344  Q
    | | ||||||||||||||    
T  53282163 cttcatagaagctccctt 53282146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 144 - 342
Target Start/End: Original strand, 36950181 - 36950380
Alignment:
Q  144 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccgcactacactggaaca 242  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||| || ||||  ||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggtactgtagaacgc-ctgcactctaaca 36950279  T
Q  243 tgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcc 341  Q
    | ||  ||||| ||||||||||||| | || |||||| ||||||||||||||||||||||||| || ||||| |||| |||||||| | |||||||||||    
T  36950280 taatgcagggtatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctcc 36950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 29703544 - 29703760
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    ||||||||||  || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| ||||    
T  29703544 catgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaaccg 29703643  T
Q  228 cactacactggaacatgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgactt 326  Q
    | || ||||  ||||| ||  ||||| || |||||||||| | || |||||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  29703644 c-ctgcactataacataatgcagggtatccgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgactt 29703742  T
Q  327 cattatagaagctccctt 344  Q
    |    |||||||||||||    
T  29703743 ctccgtagaagctccctt 29703760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 29833360 - 29833269
Alignment:
Q  253 ttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccctt 344  Q
    |||||||||||||| | |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||    
T  29833360 ttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttcttcgtagaagctccctt 29833269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 12938485 - 12938392
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcccttgaa 347  Q
    |||||||||||||   || |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||    
T  12938485 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctcccttgaa 12938392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 33216791 - 33216878
Alignment:
Q  257 gacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccctt 344  Q
    |||||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||  |||||||||||||    
T  33216791 gacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtcattttaatgacttcatcgtagaagctccctt 33216878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 31658828 - 31658888
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcat 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  31658828 catgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcat 31658888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 50650400 - 50650468
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||||| |||||||| |||||||||    
T  50650400 catgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 50650468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 12938610 - 12938542
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||| | ||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||||    
T  12938610 catgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 12938542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 5233132 - 5233097
Alignment:
Q  9 gatgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  5233132 gatgaagaagatgaaggaaagatgaagatgttgatt 5233097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 20104508 - 20104473
Alignment:
Q  9 gatgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  20104508 gatgaagaagatgaaggaaagatgaagatgttgatt 20104473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 39833120 - 39833154
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  39833120 atgaagaagatgaaggaaagatgaagatgttgatt 39833154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 29833483 - 29833424
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcat 189  Q
    ||||| ||||||||||||| |||| |||||| | |||  |||||||||||||||||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcat 29833424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 33216668 - 33216731
Alignment:
Q  134 gtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    ||||||| ||||||| |||| |||||||  |||  |||||||||||||||||||||||| ||||    
T  33216668 gtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaa 33216731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 34132969 - 34132932
Alignment:
Q  299 ttcaccaaagaagtcattttcctgacttcattatagaa 336  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  34132969 ttcaccaaaaaagtcattttcgtgacttcattatagaa 34132932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 129 - 342
Target Start/End: Complemental strand, 531752 - 531539
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  531752 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaagttttccttcacttacgctaccgtagaccgc 531653  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  531652 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 531553  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  531552 tcatagaagctccc 531539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 30945461 - 30945677
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30945461 catgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaagttttcattcacttacgctaccgtagaccgc 30945558  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcacc---aaagaagtcattttcctgact 325  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||    
T  30945559 actacactggaacatgattagggtttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagaagtcattttcctgact 30945658  T
Q  326 tcattatagaagctccctt 344  Q
    |||| ||||||||||||||    
T  30945659 tcatcatagaagctccctt 30945677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 344
Target Start/End: Original strand, 3879490 - 3879691
Alignment:
Q  144 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccgcactacactggaaca 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||||||||| || |||   ||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagtttttcttctacttacagtactgtagaccgc-ctgcacactaaca 3879588  T
Q  243 tgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcc 341  Q
    | ||  ||||| ||||||||||||| | || |||||| |||||| |||||||||||||||||| || ||||| |||| |||||||| |  ||||||||||    
T  3879589 taatgcagggtatctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctcc 3879688  T
Q  342 ctt 344  Q
    |||    
T  3879689 ctt 3879691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 13802812 - 13802901
Alignment:
Q  253 ttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccc 342  Q
    |||||||||||||| | |||||||||||||||  |||||||||||||| ||| || |||||||||| |||||||| |  |||||||||||    
T  13802812 ttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtcattttactgacttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 13802689 - 13802748
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcat 189  Q
    ||||||||||||||||||| ||||  ||||||| |||  |||||||||||||||||||||    
T  13802689 atgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcat 13802748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 531871 - 531837
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  531871 atgaagaagatgaaggaaagatgaagatgttgatt 531837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 9864190 - 9864153
Alignment:
Q  299 ttcaccaaagaagtcattttcctgacttcattatagaa 336  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  9864190 ttcaccaaaaaagtcattttcgtgacttcattatagaa 9864153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 30945348 - 30945377
Alignment:
Q  15 gaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||    
T  30945348 gaagatgaaggaaagatgaagatgttgatt 30945377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 129 - 342
Target Start/End: Complemental strand, 45972491 - 45972278
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45972491 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 45972392  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45972391 actacactagaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 45972292  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  45972291 tcatagaagctccc 45972278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 129 - 342
Target Start/End: Complemental strand, 29243446 - 29243235
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29243446 catgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaagttttcattcacttacgctaccgtagaccgc 29243349  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  29243348 actacactggaacatgattagggtttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttca 29243249  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  29243248 tcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 129 - 342
Target Start/End: Complemental strand, 47328010 - 47327797
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||  |||||| ||    
T  47328010 catgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttcacttacagtattgtagactgc 47327911  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    ||||||||| ||||| |||| | |||||||||||||||   ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||     
T  47327910 actacactgtaacattattaagatttctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttct 47327811  T
Q  329 ttatagaagctccc 342  Q
    |  |||||||||||    
T  47327810 tcgtagaagctccc 47327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 34094175 - 34093971
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||           |||||| ||||||| ||| ||||||||    
T  34094175 catgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagattatg-----------tccttctacttacggtactgtagaccg 34094087  T
Q  228 cactacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    | |||||||| ||||||||   | |||||||||||||     |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  34094086 c-ctacactgtaacatgatgcagttttctgacgtgtctaggattaaaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttc 34093988  T
Q  328 attatagaagctccctt 344  Q
     |  |||||||||||||    
T  34093987 ttcgtagaagctccctt 34093971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 343
Target Start/End: Complemental strand, 6442694 - 6442491
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccg 227  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||  |||||||||||           |||||| ||||||| ||| ||||||||    
T  6442694 catgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatg-----------tccttctacttacggtactgtagaccg 6442606  T
Q  228 cactacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    | |||||||| ||||||||   | ||||||||||||      |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6442605 c-ctacactgtaacatgatgcagttttctgacgtgtataggattaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttc 6442507  T
Q  328 attatagaagctccct 343  Q
     |  ||||||||||||    
T  6442506 ttcgtagaagctccct 6442491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 29258471 - 29258386
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagct 339  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||| || | ||||||||| || || |||||| | |||||||||    
T  29258471 tctgacgtgtcatcacttgaaatctgattggcccattcaaacaactgcatcgaagaagtcaattgcccgacttcttcatagaagct 29258386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 19436881 - 19436813
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||| | ||||||||||||||||||||||| |||  |||||||||  |||||||| |||||||||    
T  19436881 catgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 19436813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 47328128 - 47328093
Alignment:
Q  9 gatgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  47328128 gatgaagaagatgaaggaaagatgaagatgttgatt 47328093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 45972610 - 45972576
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  45972610 atgaagaagatgaaggaaagatgaagatgttgatt 45972576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 29833953 - 29834021
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||| ||| ||| ||||||||||||||||||| |||  |||||||||  |||||||| |||||||||    
T  29833953 catgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 29834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 29243559 - 29243530
Alignment:
Q  15 gaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||    
T  29243559 gaagatgaaggaaagatgaagatgttgatt 29243530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 129 - 343
Target Start/End: Complemental strand, 17690672 - 17690458
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  17690672 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagttttccttcacttacgctaccgtagaccgc 17690573  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  17690572 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttca 17690473  T
Q  329 ttatagaagctccct 343  Q
    | |||||||||||||    
T  17690472 tcatagaagctccct 17690458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 15330803 - 15330587
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15330803 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 15330704  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaat-ctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15330703 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatactgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttc 15330604  T
Q  328 attatagaagctccctt 344  Q
    || ||| ||||||||||    
T  15330603 atcataaaagctccctt 15330587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 129 - 343
Target Start/End: Original strand, 14810123 - 14810336
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  14810123 catgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccatagaccgc 14810222  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14810223 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgac-tcaccaaagaagtcattttcctgacttca 14810321  T
Q  329 ttatagaagctccct 343  Q
    | |||||||||||||    
T  14810322 tcatagaagctccct 14810336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 129 - 337
Target Start/End: Complemental strand, 16429932 - 16429724
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |    
T  16429932 catgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccctcacttacgctaccgtagaccac 16429833  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  16429832 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttca 16429733  T
Q  329 ttatagaag 337  Q
    | |||||||    
T  16429732 tcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 37261705 - 37261912
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37261705 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttcacttacgctaccgtagaccgc 37261804  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||        ||||||||||| ||||||||    
T  37261805 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcctattcaaacgactt--------aagtcattttcatgacttca 37261896  T
Q  329 ttatagaagctccctt 344  Q
    | ||||||||||||||    
T  37261897 tcatagaagctccctt 37261912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 37079015 - 37078800
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||  |||||||||    
T  37079015 catgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttcacttacggtattgtagaccgc 37078916  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    ||||||||| ||||| |||| | ||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||     
T  37078915 actacactgtaacattattaagatttctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttct 37078816  T
Q  329 ttatagaagctccctt 344  Q
    |  |||||||||||||    
T  37078815 tcgtagaagctccctt 37078800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 144 - 344
Target Start/End: Complemental strand, 7089278 - 7089077
Alignment:
Q  144 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccgcactacactggaaca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || ||||  ||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggtactgtagaccgc-ctgcactctaaca 7089180  T
Q  243 tgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcc 341  Q
    | ||  ||||| ||||||||||||| | || |||||| ||||||||||||||||||||||| | || ||||| |||| |||||||| | |||||||||||    
T  7089179 taatgcagggtatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagctcc 7089080  T
Q  342 ctt 344  Q
    |||    
T  7089079 ctt 7089077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 144 - 337
Target Start/End: Original strand, 33755093 - 33755287
Alignment:
Q  144 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccgcactacactggaaca 242  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||  |||||||| || ||||  ||||    
T  33755093 taccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaagtttttcttctacttacggtactctagaccgc-ctgcactctaaca 33755191  T
Q  243 tgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaag 337  Q
    | ||  ||||| ||||||||||||| | || |||||| |||| |||||||||||||||||||| || ||||| |||| |||||||| | |||||||    
T  33755192 taatgcagggtatctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 18977120 - 18977187
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||    
T  18977120 atgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaataaa 18977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 18977221 - 18977310
Alignment:
Q  256 tgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctcccttg 345  Q
    ||||||||||| | ||||||||||||||||  | | ||||||||||| | |||||||||||||||||||||| | |||||||||||||||    
T  18977221 tgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctcccttg 18977310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 37079133 - 37079098
Alignment:
Q  9 gatgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  37079133 gatgaagaagatgaaggaaagatgaagatgttgatt 37079098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 14810004 - 14810038
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  14810004 atgaagaagatgaaggaaagatgaagatgttgatt 14810038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 15330922 - 15330888
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  15330922 atgaagaagatgaaggaaagatgaagatgttgatt 15330888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 16430051 - 16430017
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  16430051 atgaagaagatgaaggaaagatgaagatgttgatt 16430017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 37261586 - 37261620
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  37261586 atgaagaagatgaaggaaagatgaagatgttgatt 37261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 14096465 - 14096397
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    ||||||||||  ||||||||||||| |||||||| |||  |||||||||  |||||||| |||||||||    
T  14096465 catgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaataaa 14096397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 17690789 - 17690757
Alignment:
Q  12 gaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||    
T  17690789 gaagaagatgaaggaaagatgaagatgttgatt 17690757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 14096340 - 14096252
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccc 342  Q
    |||||||||||||   || |||||||||||||  | | ||||||||||||| || |||||| || || |||||| | ||||||||||||    
T  14096340 tctgacgtgtcatgtcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattccccgacttcttcatagaagctccc 14096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 18977002 - 18977030
Alignment:
Q  12 gaagaagatgaaggaaagatgaagatgtt 40  Q
    |||||||||||||||||||||||||||||    
T  18977002 gaagaagatgaaggaaagatgaagatgtt 18977030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 30715 - 30928
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  30715 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagctttccttcacttacgctaccgtagaccgc 30814  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30815 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 30914  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  30915 tcatagaagctccc 30928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 30596 - 30630
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  30596 atgaagaagatgaaggaaagatgaagatgttgatt 30630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 24788332 - 24788545
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttcacttacgctaccgtagaccgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  24788332 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagctttccttcacttacgctaccgtagaccgc 24788431  T
Q  229 actacactggaacatgattagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttca 328  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24788432 actacactggaacatgattagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttca 24788531  T
Q  329 ttatagaagctccc 342  Q
    | ||||||||||||    
T  24788532 tcatagaagctccc 24788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 327
Target Start/End: Complemental strand, 39884763 - 39884565
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttc-acttacgctaccgtagaccgc 228  Q
    |||||||||  || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||||    
T  39884763 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaaccgc 39884664  T
Q  229 actacactggaacatgat-tagggtttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttc 327  Q
     || ||||| ||||| ||  | ||| ||||||||||||| | || |||||||||||| ||||||||||||||||||| || |||||||||| ||||||||    
T  39884663 -ctgcactgtaacataatgcatggtatctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttc 39884565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 1828496 - 1828408
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccc 342  Q
    |||||||||||||   || |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||    
T  1828496 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 1828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 40313961 - 40313873
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccc 342  Q
    |||||||||||||   || |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||    
T  40313961 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 40313873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 41413576 - 41413664
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccc 342  Q
    |||||||||||||   || |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||    
T  41413576 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 41413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 31482201 - 31482291
Alignment:
Q  253 ttctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccct 343  Q
    |||||| ||||||| | ||||||| |||||||| |||||||||||||| ||| ||||||||||||| |||||||| |  ||||||||||||    
T  31482201 ttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtcattttactgacttcttcgtagaagctccct 31482291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 31482078 - 31482145
Alignment:
Q  130 atgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    ||||||||||||||||||| |||| |||||||| |||  |||||||||||||||||||||||| ||||    
T  31482078 atgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaa 31482145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 1828621 - 1828553
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||| | ||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||||    
T  1828621 catgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 1828553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 40314086 - 40314018
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||| | ||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||||    
T  40314086 catgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 40314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 41413451 - 41413519
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||| | ||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||||    
T  41413451 catgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 41413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 30625073 - 30625005
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||||| |||| ||  |||||||||    
T  30625073 catgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaataaa 30625005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 24788213 - 24788247
Alignment:
Q  10 atgaagaagatgaaggaaagatgaagatgttgatt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  24788213 atgaagaagatgaaggaaagatgaagatgttgatt 24788247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 30624948 - 30624859
Alignment:
Q  254 tctgacgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtcattttcctgacttcattatagaagctccct 343  Q
    ||||||||||||| | || ||||||||||||   | | |||||||||||| ||| |||||| ||||  |||||| | |||||||||||||    
T  30624948 tctgacgtgtcatgacttgaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttctcgacttcttcatagaagctccct 30624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 28138048 - 28138116
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    ||||||||||||  |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  28138048 catgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaa 28138116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 12938851 - 12938783
Alignment:
Q  129 catgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||||||| ||||||||||||||||||||||| |||  |||||||||| |||||||  |||||||||    
T  12938851 catgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaa 12938783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 33694861 - 33694805
Alignment:
Q  258 acgtgtcattatttaaaatctgattggcccattcaaacgacttcaccaaagaagtca 314  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||| || ||||||    
T  33694861 acgtgtcatcacttaaaatctgattggtccattcaaacgacttcaccgaaaaagtca 33694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 33694985 - 33694921
Alignment:
Q  133 tgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 197  Q
    |||||| ||||||||||||||| ||||||  ||| ||||||||||  ||||||||||||||||||    
T  33694985 tgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaataaa 33694921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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