View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_39 (Length: 373)
Name: NF15182_high_39
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 50082877 - 50082526
Alignment:
| Q |
1 |
aagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgttggatgatgttca |
100 |
Q |
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| T |
50082877 |
aagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgttggatgatgttca |
50082778 |
T |
|
| Q |
101 |
tagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttattatatttatatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50082777 |
tagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatta---ttatatatc |
50082681 |
T |
|
| Q |
201 |
ctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctccatgctttcattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50082680 |
ctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctccatgctttcattta |
50082581 |
T |
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| Q |
301 |
ttttagggctagaatgcaattaatcatctcaagataagaaaatgtgggtatgtta |
355 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50082580 |
ttttagggctagaatgcaattaattatctcaagataagaaaatgtgggtatgtta |
50082526 |
T |
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