View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_high_42 (Length: 369)
Name: NF15182_high_42
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 16184550 - 16184900
Alignment:
| Q |
1 |
atgtctagggtattgcaagttgaacttgaagttgaagaggagaaggttcaaaaaatgacaagtgataaaaggaatagctatggcttgttcagcaagcaat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16184550 |
atgtctaaggtattgcaagttgaacttgaagttgaagaggagaaggtacaaaaaatgactagtgataaaaggaatagttatggcttgttcagcaagcaat |
16184649 |
T |
|
| Q |
101 |
tcgcagcacgacatggtttggctttgtttggaacatgtagtacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16184650 |
tcgcagcacgacacggtttggctttgtttggaacatgtagtacatggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
16184749 |
T |
|
| Q |
201 |
tagtgcaattggatggatacctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16184750 |
tagcgcaattggatggatacctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
16184849 |
T |
|
| Q |
301 |
gttccgggttactggttcacagtagcgtttatcgatcacatgggtcgtttc |
351 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
16184850 |
gttccgggttactggttcacggtagcatttatcgatcacatgggtcgtttc |
16184900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 16223940 - 16224290
Alignment:
| Q |
1 |
atgtctagggtattgcaagttgaacttgaagttgaagaggagaaggttcaaaaaatgacaagtgataaaaggaatagctatggcttgttcagcaagcaat |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16223940 |
atgtctaaggtgttgcaagttgaacttgaagttgaagaggagaaggtagaaaaaatgactagtgataaaaggaatagttatggcttgttcagcaagcaat |
16224039 |
T |
|
| Q |
101 |
tcgcagcacgacatggtttggctttgtttggaacatgtagtacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16224040 |
tcgcagcacgacatggtttggctttgtttggaacatgtagtacatggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
16224139 |
T |
|
| Q |
201 |
tagtgcaattggatggatacctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
300 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16224140 |
tagcgcaatcggatggatccctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
16224239 |
T |
|
| Q |
301 |
gttccgggttactggttcacagtagcgtttatcgatcacatgggtcgtttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16224240 |
gttccgggttactggttcacagtagcgtttatcgatcacatgggtcgtttc |
16224290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 16174812 - 16174462
Alignment:
| Q |
1 |
atgtctagggtattgcaagttgaacttgaagttgaagaggagaaggttcaaaaaatgacaagtgataaaaggaatagctatggcttgttcagcaagcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16174812 |
atgtctaaggtattgcaagttgaacttgaagttgaagaagagaaggtacaaaaaatgactagtgataaaaggaatagttatggcttgttcagcaagcaat |
16174713 |
T |
|
| Q |
101 |
tcgcagcacgacatggtttggctttgtttggaacatgtagtacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16174712 |
tcgcaaaacgacatggttgggctttgtttggaacatgtagtacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttt |
16174613 |
T |
|
| Q |
201 |
tagtgcaattggatggatacctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
300 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16174612 |
tagcgcaatcggatggatccctccggcaaaagaaatgaatgcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtact |
16174513 |
T |
|
| Q |
301 |
gttccgggttactggttcacagtagcgtttatcgatcacatgggtcgtttc |
351 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
16174512 |
gttccgggctactggttcacagtcgcatttatcgatcacatgggtcgtttc |
16174462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 141 - 350
Target Start/End: Original strand, 33109790 - 33109999
Alignment:
| Q |
141 |
tacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagtgcaattggatggatacctccggcaaaagaaatgaat |
240 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||| | || ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
33109790 |
tacttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtggatccctccagcaaaagaaatgaat |
33109889 |
T |
|
| Q |
241 |
gcaattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacagtagcgtttatcgatcaca |
340 |
Q |
| |
|
|||||| | || | || | |||||||||||||||||| ||||| || ||||||||||| || || ||||||||||| ||||| || ||||||||| ||| |
|
|
| T |
33109890 |
gcaattaacgaactgtataggattgcaagagcacaaacccttatagcattgtgcagtacagtgccaggttactggtttacagtggcatttatcgattaca |
33109989 |
T |
|
| Q |
341 |
tgggtcgttt |
350 |
Q |
| |
|
|||||||||| |
|
|
| T |
33109990 |
tgggtcgttt |
33109999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 30620196 - 30620018
Alignment:
| Q |
145 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagtgcaattggatggatacctccggcaaaagaaatgaatgcaa |
244 |
Q |
| |
|
||||||||| | |||||||| || || ||||||||||||||||||||||| || || ||||||||||| ||||| || | ||||| ||||||||| |
|
|
| T |
30620196 |
tggtttttgcttgatattgcattttacagtcagaatcttttccaaaaggatatcttcagtgcaattggttggattccgtctgcaaagacgatgaatgcac |
30620097 |
T |
|
| Q |
245 |
ttcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacagt |
323 |
Q |
| |
|
|| | |||||||| || ||||| || || |||||||||||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
30620096 |
ttgaagaggtttataaaattgcgagggcgcaaacacttattgcattatgcagtacagttcctggttactggttcacagt |
30620018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 323
Target Start/End: Original strand, 33115832 - 33116013
Alignment:
| Q |
142 |
acttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagtgcaattggatggatacctccggcaaaagaaatgaatg |
241 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||||||||||| || || ||||| ||||||||||||||||| || || ||| |||| || |
|
|
| T |
33115832 |
acttggttcttgttggatattgcttattatagtcaaaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
33115931 |
T |
|
| Q |
242 |
caattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacagt |
323 |
Q |
| |
|
| | | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| ||||||||||||||||| |
|
|
| T |
33115932 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagt |
33116013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 30615313 - 30615264
Alignment:
| Q |
274 |
caaacacttattgcgttgtgcagtactgttccgggttactggttcacagt |
323 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
30615313 |
caaacacttattgctttatgtagtacagttcctggttactggttcacagt |
30615264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 38893873 - 38894048
Alignment:
| Q |
142 |
acttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagtgcaattggatggatacctccggcaaaagaaatgaatg |
241 |
Q |
| |
|
|||||||| ||| | ||||| || || || ||||| ||||| ||||| ||||| || || ||||||||||| |||||||| || ||| || ||||||| |
|
|
| T |
38893873 |
acttggttcttgcttgatatagcattttacagtcaaaatctcttccagaaggatatcttcagtgcaattggttggataccacctgcacaaactatgaatg |
38893972 |
T |
|
| Q |
242 |
caattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggtt |
317 |
Q |
| |
|
|| || | ||||||||||| || |||||||| |||||||||||||| | |||||||| ||||| || |||||||| |
|
|
| T |
38893973 |
cacttgaggaggtttacaaaatcgcaagagctcaaacacttattgctctatgcagtacagttccaggctactggtt |
38894048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 38884687 - 38884862
Alignment:
| Q |
142 |
acttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagtgcaattggatggatacctccggcaaaagaaatgaatg |
241 |
Q |
| |
|
|||||||| ||| | ||||| || || ||||| || ||||| ||||| ||||| ||||| || |||||||| |||||||| || || || ||||||| |
|
|
| T |
38884687 |
acttggttcttgcttgatatagcattttatagccaaaatctcttccagaaggatattttcagcgcaattggttggataccacctccacaaaccatgaatg |
38884786 |
T |
|
| Q |
242 |
caattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggtt |
317 |
Q |
| |
|
|| || | ||||||||||| ||||| |||| |||||||||||||| | |||||||| ||||| ||||| ||||| |
|
|
| T |
38884787 |
cacttgaggaggtttacaaaattgctcgagctcaaacacttattgctctatgcagtacagttccaggttattggtt |
38884862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University