View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_45 (Length: 359)
Name: NF15182_high_45
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2484425 - 2484103
Alignment:
| Q |
1 |
tcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
100 |
Q |
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||||| |||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484425 |
tcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
2484326 |
T |
|
| Q |
101 |
ggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaaccaaaccgaattcaaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2484325 |
ggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc--------------gaattcaaa |
2484240 |
T |
|
| Q |
201 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484239 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
2484140 |
T |
|
| Q |
301 |
taaatatacaatttatcaccaaattgcatcacaacca |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2484139 |
taaatatacaatttatcaccaaattgcatcacaacca |
2484103 |
T |
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