View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_46 (Length: 338)
Name: NF15182_high_46
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 73 - 329
Target Start/End: Complemental strand, 52764386 - 52764129
Alignment:
| Q |
73 |
cttgacaacaatcgatttagctcaagtttgtcagcaacgtccataacatggtcgatgcaaatgcaatacatttcctccttttccagtgagttaaacaaaa |
172 |
Q |
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| T |
52764386 |
cttgacaacaatcgatttagctcaagtttgtcagcaacgtccataacatggtcgatgcaaatgcaatacatttcctctttttccagtgagttaaacaaaa |
52764287 |
T |
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| Q |
173 |
catgaatcggtatgttcttacgagatgaggaaagtgcttttgttttggctaaaattatgtgttttacttctttgtgcattgtggatgtgggtgaagcact |
272 |
Q |
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| T |
52764286 |
catgaatcggtatgttcttacaagatgaggaaagtgcttttgttttggctaaaattatgtgttttacttctttgtgcactgtggatgtgggtgaagcact |
52764187 |
T |
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| Q |
273 |
aagcttgcttaca-nnnnnnnccagtaagttaaacaaaacatgaattggtatattctt |
329 |
Q |
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| T |
52764186 |
aagcttgcttacattctttttccagtaagttaaacaatacatgaattggtatattctt |
52764129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 285
Target Start/End: Complemental strand, 52764169 - 52764036
Alignment:
| Q |
151 |
ttttccagtgagttaaacaaaacatgaatcggtatgttcttacgagatgaggaaagtgcttttgttttggctaaaattatgtgttttacttctttgtgca |
250 |
Q |
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| T |
52764169 |
ttttccagtaagttaaacaatacatgaattggtatattcttacgagat-aggaaggtacttttgttttggctaaaaatatgtgttttactcttttgtgca |
52764071 |
T |
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| Q |
251 |
ttgtggatgtgggtgaagcactaagcttgcttaca |
285 |
Q |
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| T |
52764070 |
ccgtggacgagggtgaagcgctaaacttgcttaca |
52764036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 52764809 - 52764753
Alignment:
| Q |
22 |
aacggttacagagcagccttccacttatgggtcagcaggtcaaaaccttcacttgac |
78 |
Q |
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| T |
52764809 |
aacggttacagagcagccttccacttatgggtcagtaggtcaaaaccttcacttgac |
52764753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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