View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_51 (Length: 324)
Name: NF15182_high_51
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 23430885 - 23430593
Alignment:
| Q |
19 |
atgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtataactattat |
115 |
Q |
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| T |
23430885 |
atgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtataactattat |
23430786 |
T |
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| Q |
116 |
aatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttccaacatctttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23430785 |
aatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttccaacatctttt |
23430686 |
T |
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| Q |
216 |
gcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgg |
308 |
Q |
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| T |
23430685 |
gcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgg |
23430593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
73 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
172 |
Q |
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|||||||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||| |||| ||||| |||| |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
173 |
tacaacatcttgt |
185 |
Q |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
60 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
126 |
Q |
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|||||||||| ||||||| || || |||||||||||| ||| | ||||||| ||||||||||||||| |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 23438687 - 23438651
Alignment:
| Q |
272 |
gcttctacgagtggaaggcaatgtcaggtgaacatgg |
308 |
Q |
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| T |
23438687 |
gcttctacgagtggaaggcaatgtcaggtgaagatgg |
23438651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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