View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_53 (Length: 321)
Name: NF15182_high_53
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_53 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 38713073 - 38712775
Alignment:
| Q |
16 |
catacttgtgttgcaactcggactacaactattttcttcaaaatattagggactggtgcataaacatgatattctagcaaggcaataaacaaaacaaagt |
115 |
Q |
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| T |
38713073 |
catacttgtgttgcaactcggactacaactattttcttcaaaatattagggactggtgcataaacatgatattctagcaaggcaataaacaaaacaaagt |
38712974 |
T |
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| Q |
116 |
tattccaatgaactaaaacttgctgttcttgcgaaaacaaatgacccaaaacttgcttgtatgataattaacagaatagtcccaaatcagtctcattata |
215 |
Q |
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| T |
38712973 |
tattccaatgaactaaaacttgctgttattaccaaaacaaatgacccaaaacttgcttgtatgataattaacagaatagtcccaaatcagtctcattata |
38712874 |
T |
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| Q |
216 |
caagtattagttattgtaaatttgtaaccaaactttttggtcaagaatcaagatagttaacttaccattcggtgtctactctcctcttgatgaactcatc |
315 |
Q |
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| T |
38712873 |
taagtattagttattgtaaatttgtaaccaaactttttggtc-------aagatagttaacttaccattcggtgtctactctcctcttgatgaactcatc |
38712781 |
T |
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