View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_56 (Length: 313)
Name: NF15182_high_56
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 17057874 - 17058158
Alignment:
| Q |
13 |
tagggcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaa |
112 |
Q |
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| T |
17057874 |
tagggcttaccaaaggattgcttatcaaagaattgtggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaa |
17057973 |
T |
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| Q |
113 |
acgttttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactaca |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17057974 |
acgttttttcatgccaaggatttggttcttgtctttggcgaatatattttttccagaatcttcaccttcccatctaccaagtccaatagtgcgaactacg |
17058073 |
T |
|
| Q |
213 |
cgagagctagttgcagatttcttctttaaggttgtaaagaagtataggtctttttcacgatacgagtaggaagttccgaactctt |
297 |
Q |
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| T |
17058074 |
cgcgagctagttgcagatttcttctttaaggttgtaaagaagtataagtcttttccacgatttgagttggaagttccgaactctt |
17058158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 22598561 - 22598758
Alignment:
| Q |
17 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
116 |
Q |
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||||||||||| ||| ||||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||| |||||||| ||||||| | |
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| T |
22598561 |
gcttaccaaagaatttcttatcaaagatttgtcaaggctatattcatgcaagatccattcaccatcatggtaagtgccactattctcaaatcgaaaacat |
22598660 |
T |
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| Q |
117 |
tttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccag---catcttcaccttcccatcgaccaagtccaatagtgcgaactac |
211 |
Q |
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| T |
22598661 |
tttttcacaccaatgagttggttcttgttttttgcaactataatttttccagtgtcttcttcaccttcccatgcaccaattccaatagaacgaactac |
22598758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 6044738 - 6044614
Alignment:
| Q |
17 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
116 |
Q |
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||||||| ||| |||| | |||||||| | || ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| | |||||| |
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| T |
6044738 |
gcttaccgaagcattgttaatcaaagatatgtgaaggctatattcatgcaagatccatccaccatctttagaagtgttactcttctcaaagcagaaacgt |
6044639 |
T |
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| Q |
117 |
tttttcatgccgaggatttggttct |
141 |
Q |
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| T |
6044638 |
tttttcagacctagggtttggttct |
6044614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 23432928 - 23433034
Alignment:
| Q |
160 |
ttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactacacgagagctagttgcagatttcttctttaaggttgtaaagaagtatag |
259 |
Q |
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||||||||||||||||||| ||| ||| || ||||||||||||| |||||| || ||||||| | || |||||||||||||||||| ||||||||| || |
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| T |
23432928 |
ttttcccagcatcttcaccctcctatctacgaagtccaatagtgtgaactatgcgtgagctagctacaaatttcttctttaaggttgcaaagaagtaaag |
23433027 |
T |
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| Q |
260 |
gtctttt |
266 |
Q |
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|| |||| |
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| T |
23433028 |
gtatttt |
23433034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 48060055 - 48060317
Alignment:
| Q |
17 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
116 |
Q |
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||||||||||| |||| | |||||||| || | ||| ||||||||||||| |||||| |||| || || |||||| ||||||| |||| ||||||||| |
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| T |
48060055 |
gcttaccaaagtattgttaatcaaagatttgtcaaggttatattcatgcaagatccatgcaccgtcatggaaagtgttactcttcccaaagcgaaaacgt |
48060154 |
T |
|
| Q |
117 |
tttttcatgccgaggatttggttcttgtctttggcgaatatatttttcccagcatcttcaccttcccatcgaccaagtccaatagtgcgaactacacgag |
216 |
Q |
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||||| || || | || || ||| | |||||||| | ||| ||| || | |||||||||||||| |||| ||||||||| |||| | || |
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| T |
48060155 |
ttttttatacctaagactttgttagtctctttggcaactattccttttccggtgtcttcaccttcccacgtaccacttccaatagtacgaatcaagcgtt |
48060254 |
T |
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| Q |
217 |
agctagttgcagatttcttctttaaggttgtaaagaagtataggtctttttcacgatacgagt |
279 |
Q |
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||||| |||||||||||||||||||| || ||||| |||||||||||| ||| ||| |||| |
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| T |
48060255 |
tactagtggcagatttcttctttaaggtagtgaagaaatataggtcttttccacaatatgagt |
48060317 |
T |
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