View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_57 (Length: 311)
Name: NF15182_high_57
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 233090 - 233370
Alignment:
| Q |
17 |
aaaatgaagctgctctttcaaataattgttgatttatatgtatggtcatgaatatcctgaaattatgaacatacaatatcaatttgtgaaacactaatat |
116 |
Q |
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| T |
233090 |
aaaatgaagctgctctttcaaataattgttgatttatatgtatggtcatgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatat |
233189 |
T |
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| Q |
117 |
actataaactacatagaatcagaactcaaatcctgacagtaacaatcttaatcaagttttacttactttctgactaaacctggaggaataggtctaggcc |
216 |
Q |
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| T |
233190 |
actataaactacatagaatcagaactcaaatcctgatagtaacaatcttaatcaagttttacttactttctgactaaacctggaggaataggtctaggcc |
233289 |
T |
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| Q |
217 |
aagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccc |
297 |
Q |
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| T |
233290 |
aagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccc |
233370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 35 - 297
Target Start/End: Original strand, 225508 - 225779
Alignment:
| Q |
35 |
caaataattgttgatttatatgtatggtcatgaatatcctgaaattatgaacatacaatatcaatttgtgaaacactaatata--------ctataaact |
126 |
Q |
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| T |
225508 |
caaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaact |
225607 |
T |
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| Q |
127 |
acatagaatcagaactcaaatcctgacagtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggccaagtttgag |
225 |
Q |
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| T |
225608 |
atatacaatccgaactagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgag |
225707 |
T |
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| Q |
226 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
225708 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcggaaaagagatgccc |
225779 |
T |
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