View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_58 (Length: 309)
Name: NF15182_high_58
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_58 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 16486283 - 16485986
Alignment:
| Q |
8 |
tgaaatgaaaccagcaattgcaaaatgaaatcatcaaatcacaaggaccaaagtgctagaaccaaatgaacaaatgtttttcacacattcaaa--gacaa |
105 |
Q |
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| T |
16486283 |
tgaaatgaaaccagcagttgcaaaatgaaatcatcaaatcacaaggatcaaagtgcta------aataaacaaatgtttttcacacattcacaacgacaa |
16486190 |
T |
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| Q |
106 |
taagtgtatgaaatttaagtgttgtccttgtatcgaatagaaacttaatttctcgtctaattgatggaatacattgaagctgatagtatcttttcaattt |
205 |
Q |
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| T |
16486189 |
taagtgtatgaaatttgagtgttgtccttatatctaatagaaacttaatttatcgtctaattgatggaatgcattgaagctgatagtatctttccaattt |
16486090 |
T |
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| Q |
206 |
taaaatgtaaattactatgaatgaaatgagagaattgaatgaaaatatatttctcattaatgaatgaatttagttagtagaagttgtatatatataaaag |
305 |
Q |
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| T |
16486089 |
taaaatgtaaattactatgaatgaatagagagaattgaatgaaaatatatttctcattaatgaatgaatttagttagtagaagttgtatatatataaaag |
16485990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 16490881 - 16490841
Alignment:
| Q |
20 |
agcaattgcaaaatgaaatcatcaaatcacaaggaccaaag |
60 |
Q |
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| T |
16490881 |
agcagttgcaagatgaaatcatcaaatcacaaggaccaaag |
16490841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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