View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_69 (Length: 286)

Name: NF15182_high_69
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_69
NF15182_high_69
[»] chr5 (5 HSPs)
chr5 (37-264)||(40599708-40599933)
chr5 (37-176)||(42268611-42268749)
chr5 (206-264)||(40680999-40681057)
chr5 (204-263)||(12156477-12156536)
chr5 (204-264)||(26331076-26331136)
[»] chr7 (4 HSPs)
chr7 (41-176)||(43032282-43032415)
chr7 (203-262)||(43032445-43032504)
chr7 (37-176)||(24718209-24718346)
chr7 (201-261)||(24718127-24718187)
[»] chr3 (2 HSPs)
chr3 (41-176)||(31699417-31699551)
chr3 (204-262)||(18269792-18269850)
[»] chr1 (6 HSPs)
chr1 (201-267)||(2077362-2077428)
chr1 (206-264)||(15496002-15496060)
chr1 (37-113)||(2077225-2077300)
chr1 (226-264)||(26842000-26842038)
chr1 (204-264)||(10494892-10494952)
chr1 (204-264)||(32058652-32058712)
[»] chr8 (3 HSPs)
chr8 (201-264)||(23635958-23636021)
chr8 (204-264)||(15050056-15050116)
chr8 (204-264)||(6444011-6444071)
[»] scaffold0092 (1 HSPs)
scaffold0092 (203-264)||(23299-23360)
[»] chr2 (4 HSPs)
chr2 (201-264)||(9910745-9910808)
chr2 (47-176)||(9910838-9910966)
chr2 (218-264)||(6705634-6705680)
chr2 (204-264)||(14950344-14950404)
[»] chr4 (4 HSPs)
chr4 (206-263)||(38093350-38093407)
chr4 (219-264)||(45873235-45873280)
chr4 (207-264)||(55728825-55728882)
chr4 (204-264)||(12469368-12469428)
[»] chr6 (1 HSPs)
chr6 (204-264)||(30845534-30845593)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 40599708 - 40599933
Alignment:
Q  37 gagttaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaatggtgtcnnnnnnnngcatggtg 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  40599708 gagtcaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaatggtgtc--ttttttgcatggtg 40599805  T
Q  137 gtgatattttggtgttgatgttgagaagcttgtgagttggnnnnnnnnnnnnnnnnnnnnnnnctccgtttgtggtgtttcgtggtggttttcacggtgg 236  Q
    ||||||||||||||||||||||||||||||||||||||||                       || ||||||||||| ||||||||||||||||||||||    
T  40599806 gtgatattttggtgttgatgttgagaagcttgtgagttggttttatttttggagattttttttctacgtttgtggtgcttcgtggtggttttcacggtgg 40599905  T
Q  237 tgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||||||||||||||||||||    
T  40599906 tgttgatactaggtcttttgtggtggtg 40599933  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 42268611 - 42268749
Alignment:
Q  37 gagttaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgt-aatggtgtcnnnnnnnngcatggt 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||   ||||||||| ||||| || || |||||||||        || ||||    
T  42268611 gagttaacgatgatgtgggtggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtc--ttttttgcgtggt 42268708  T
Q  136 ggtgatattttggtgttgatgttgagaagcttgtgagttgg 176  Q
    ||||||||||||||||| ||| | |||| ||||||||||||    
T  42268709 ggtgatattttggtgttaatgattagaaacttgtgagttgg 42268749  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 40681057 - 40680999
Alignment:
Q  206 ttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||    
T  40681057 ttgtggtgtttcatggtggtttttatggtggtgttgatacttggtcttttgtggtggtg 40680999  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 12156536 - 12156477
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggt 263  Q
    |||||||||| ||||||||||||| || ||||||||||||| | ||| ||||||||||||    
T  12156536 gtttgtggtggttcgtggtggtttccatggtggtgttgatattgggttttttgtggtggt 12156477  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 26331076 - 26331136
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||| |||||||||||||  | ||||||||||||| |  ||||||||||||||||    
T  26331076 gtttgtggtgcttcgtggtggtttctatggtggtgttgatattgagtcttttgtggtggtg 26331136  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 43032282 - 43032415
Alignment:
Q  41 taacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgt-aatggtgtcnnnnnnnngcatggtggtg 139  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||| |||| |||||| ||||||||         || ||||||||    
T  43032282 taacgatgatgtgggtggttattggtgttggttacataagg-ttttgctgttgggttgggagttagaatgtaaatggtgt--attttttgcgtggtggtg 43032378  T
Q  140 atattttggtgttgatgttgagaagcttgtgagttgg 176  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  43032379 atattttggtgttgatgatgagaagcttgtgtgttgg 43032415  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 43032445 - 43032504
Alignment:
Q  203 cgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtgg 262  Q
    ||||||||||| |||||||||||||  | ||||||||||||||| |||||||||||||||    
T  43032445 cgtttgtggtgcttcgtggtggtttatatggtggtgttgatactcggtcttttgtggtgg 43032504  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 24718346 - 24718209
Alignment:
Q  37 gagttaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgt-aatggtgtcnnnnnnnngcatggt 135  Q
    ||||||||||||||||||||||||||| |||||||||||||   |||||||   ||||||||| ||||| || || |||||||||        |  ||||    
T  24718346 gagttaacgatgatgtgggtggttattggtgttggttacat-ttgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgtg--tggt 24718250  T
Q  136 ggtgatattttggtgttgatgttgagaagcttgtgagttgg 176  Q
    |||||||||||||| || ||| | |||||||||||||||||    
T  24718249 ggtgatattttggtattaatgattagaagcttgtgagttgg 24718209  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 24718187 - 24718127
Alignment:
Q  201 tccgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtg 261  Q
    ||||| ||||||| |||||| |||||| || ||||||||||||||| ||||||||||||||    
T  24718187 tccgtctgtggtgcttcgtgctggtttacatggtggtgttgatactgggtcttttgtggtg 24718127  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 31699551 - 31699417
Alignment:
Q  41 taacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaa-tggtgtcnnnnnnnngcatggtggtg 139  Q
    ||||||||||||||||| ||||  ||||||| ||| |||||||||||   ||||||||| |||||||| |||| |||||||        | |||||||||    
T  31699551 taacgatgatgtgggtgcttataggtgttggctacgtaaggtttttgttgttgggttgggagttggaacgtaaatggtgtctttttt--gtatggtggtg 31699454  T
Q  140 atattttggtgttgatgttgagaagcttgtgagttgg 176  Q
    ||||||||||||||||| | |||||||||||||||||    
T  31699453 atattttggtgttgatgattagaagcttgtgagttgg 31699417  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 18269792 - 18269850
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtgg 262  Q
    |||||||||| ||| |||||||||||| ||||||||||||  | |||||||||||||||    
T  18269792 gtttgtggtgcttcatggtggttttcatggtggtgttgattttgggtcttttgtggtgg 18269850  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 2077362 - 2077428
Alignment:
Q  201 tccgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtgatg 267  Q
    ||||||||||||  ||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  2077362 tccgtttgtggtacttcgtggtggtttccatggtggtgttgatactgggtcttttgtggtggtgatg 2077428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 15496060 - 15496002
Alignment:
Q  206 ttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  15496060 ttgtggtgtttcgtggtggttttcatggtggtgctgatacttggtcttttgtggtggtg 15496002  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 2077225 - 2077300
Alignment:
Q  37 gagttaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaa 113  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||||||| | |||||||||||    
T  2077225 gagttaacgatgatgtgggtggttattggtgatggttacat-aggtttttgatgttgggttgggatttggaatgtaa 2077300  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 26842000 - 26842038
Alignment:
Q  226 tttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  26842000 tttcatggtggtgttgatactgggtcttttgtggtggtg 26842038  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 10494952 - 10494892
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||| |||| || ||| ||||||||| ||||||||||||| | ||||||||||| |||||    
T  10494952 gtttgcggtgctttgtgatggttttcatggtggtgttgatattgggtcttttgtgttggtg 10494892  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 32058712 - 32058652
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||| ||||| ||||||||||||| | |||||||| |||||||  ||||||||||| ||||    
T  32058712 gtttatggtgcttcgtggtggtttccgcggtggtgatgatactgagtcttttgtggaggtg 32058652  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 23636021 - 23635958
Alignment:
Q  201 tccgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||||| ||| ||||||||| || ||||||||||||||||||| |||||||||||||    
T  23636021 tccgtttgtggtgcttcatggtggtttccatggtggtgttgatactaggttttttgtggtggtg 23635958  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 15050056 - 15050116
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||| |||||||||||||  | ||||||| || ||||||||||||||||||||||    
T  15050056 gtttgtggtgcttcgtggtggtttcaatggtggtgctggtactaggtcttttgtggtggtg 15050116  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 6444071 - 6444011
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||  |||||||||||||||| ||||| | ||||  | |||||||||||||||||    
T  6444071 gtttgtggtacttcgtggtggttttcatggtggggctgattttgggtcttttgtggtggtg 6444011  T

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Target: scaffold0092 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 23360 - 23299
Alignment:
Q  203 cgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||| || |||||||||| || ||||||| |||||||||||||||||||||||||    
T  23360 cgtttgtggtgctttgtggtggtttccatggtggtgctgatactaggtcttttgtggtggtg 23299  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 9910808 - 9910745
Alignment:
Q  201 tccgtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||||| ||||||||||||| || | ||||||||||||| |||||||||| ||||||    
T  9910808 tccgtttgtggtgcttcgtggtggtttccatgatggtgttgatactgggtcttttgtagtggtg 9910745  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 9910966 - 9910838
Alignment:
Q  47 tgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaa-tgtaatggtgtcnnnnnnnngcatggtggtgatattt 145  Q
    ||||||||||||||||  |||||||||||||||||||||| |  ||||||||| |||| ||| |  ||||||||         || ||||||||||||||    
T  9910966 tgatgtgggtggttataggtgttggttacataaggtttttcctgttgggttgggagtttgaacttaaatggtgt--attttttgcgtggtggtgatattt 9910869  T
Q  146 tggtgttgatgttgagaagcttgtgagttgg 176  Q
    ||||||||||| | |||||||||| ||||||    
T  9910868 tggtgttgatgattagaagcttgtaagttgg 9910838  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 6705680 - 6705634
Alignment:
Q  218 gtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  6705680 gtggtggttttcatggtggtgctgatacttggtcttttgtggtggtg 6705634  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 14950344 - 14950404
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||| ||||||||||||| || |||| |||||||| |  || |||||||||||||    
T  14950344 gtttgtggtggttcgtggtggtttccatggtgatgttgatattgagttttttgtggtggtg 14950404  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 38093407 - 38093350
Alignment:
Q  206 ttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggt 263  Q
    |||||||| |||| ||||||||  | ||||||||||||||| ||| ||||||||||||    
T  38093407 ttgtggtggttcgcggtggtttctatggtggtgttgatactgggttttttgtggtggt 38093350  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 45873280 - 45873235
Alignment:
Q  219 tggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||||| ||||||||| ||| | |||||||||||||||||    
T  45873280 tggtggttttcatggtggtgttaatattgggtcttttgtggtggtg 45873235  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 55728882 - 55728825
Alignment:
Q  207 tgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    ||||||| ||||||||||||| || |||||||||||||||   | |||||||||||||    
T  55728882 tgtggtggttcgtggtggtttccatggtggtgttgatactgaattttttgtggtggtg 55728825  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 12469368 - 12469428
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||||||||  ||| ||||||||  || ||||||| |||||||||||||||| ||||||||    
T  12469368 gtttgtggtccttcatggtggttaccatggtggtgctgatactaggtcttttttggtggtg 12469428  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 30845593 - 30845534
Alignment:
Q  204 gtttgtggtgtttcgtggtggttttcacggtggtgttgatactaggtcttttgtggtggtg 264  Q
    |||| ||||| ||||||||||||| || ||||||| |||||||  ||||||||||||||||    
T  30845593 gtttatggtgcttcgtggtggtttccatggtggtgatgatact-tgtcttttgtggtggtg 30845534  T

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