View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_71 (Length: 275)
Name: NF15182_high_71
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_71 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 713214 - 713048
Alignment:
| Q |
93 |
aaatcttgtgtctaaatactacctcttttgacataaaatattcatatacatagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaag |
192 |
Q |
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| T |
713214 |
aaatcttgtgtctaaatactacctcttttgacataaaatattcatatacatggtaggtttgtaacctatattgtagctttgtaggtattatatgaggaag |
713115 |
T |
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| Q |
193 |
gcttatttagcaagtggatgnnnnnnngacaaccattgcaagtggatgttaattaatttgaaaaatg |
259 |
Q |
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| T |
713114 |
gcttatttagcaagtggatgaaaaaaagacaaccattgcaagtggatgttaattaatttgaaaaatg |
713048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 713362 - 713286
Alignment:
| Q |
1 |
tgaagaacaaatttatcaaaaaacttgnnnnnnnnncttcaatgacaagagaaatgaataaattaaagttgatttaa |
77 |
Q |
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| T |
713362 |
tgaagaacaaatttatcaaaaaacttgaaaaaaaaacttcaatgacaagagaaatgaataaattaaagttgatttaa |
713286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 21369748 - 21369818
Alignment:
| Q |
142 |
atagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaaggcttatttagcaagtggatg |
212 |
Q |
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| T |
21369748 |
atagtaggtttgtaacctatatagtagctctgtaggtattatactgggaaggattatttagcaagtggatg |
21369818 |
T |
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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 3763012 - 3762854
Alignment:
| Q |
93 |
aaatcttgtgtctaaatactacctcttttgacataaaatattcatatacatagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaag |
192 |
Q |
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| T |
3763012 |
aaatcttgtgtttaaatactacctgttttgacataaaatattcatatccatagtaggtttgtaacctacattgtagctttgtaggtattatatggggaag |
3762913 |
T |
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| Q |
193 |
gcttatttagcaagtggatgnnnnnnngacaaccattgcaagtggatgttaattaattt |
251 |
Q |
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|||||| |||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
3762912 |
acttattcagcaagtggatgaaaaaaagacaatcattacaagtggatgttaattaattt |
3762854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 40564728 - 40564608
Alignment:
| Q |
141 |
catagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaaggcttatttagc-aagtggatg-nnnnnnngacaaccattgcaagtgga |
238 |
Q |
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| T |
40564728 |
catagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaaggcttatttagcaaagtggatgaaaaaaaagacaaccattgcaagtgga |
40564629 |
T |
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| Q |
239 |
tgttaattaatttgaaaaatg |
259 |
Q |
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|||| |||||||||||||||| |
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| T |
40564628 |
tgttgattaatttgaaaaatg |
40564608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 36119131 - 36119008
Alignment:
| Q |
141 |
catagtaggtttgtaaccta---tattgtagctttgtaggtattatatgaggaaggcttatttagcaagtggatg--nnnnnnngacaaccattgcaagt |
235 |
Q |
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| T |
36119131 |
catagtaggtttgtaacctactatattgtagctttgtaggtattatatgaggaaggcttatttagcaagtggatgaaaaaaaaagacaaccattgcaagt |
36119032 |
T |
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| Q |
236 |
ggatgttaattaatttgaaaaatg |
259 |
Q |
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| T |
36119031 |
ggatgttgattaatttgaaaaatg |
36119008 |
T |
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Target: scaffold0170 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 19112 - 19042
Alignment:
| Q |
142 |
atagtaggtttgtaacctatattgtagctttgtaggtattatatgaggaaggcttatttagcaagtggatg |
212 |
Q |
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| T |
19112 |
atagtaggtttgtaacctatatagtagctctgtaggtattatactgggaaggattatttagcaagtggatg |
19042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 24213717 - 24213767
Alignment:
| Q |
158 |
ctatattgtagctttgtaggtattatatgaggaaggcttatttagcaagtg |
208 |
Q |
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| T |
24213717 |
ctatattgtagctttgtagttgttatatgggaaaggattatttagcaagtg |
24213767 |
T |
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