View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_78 (Length: 259)
Name: NF15182_high_78
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_78 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 24031006 - 24030766
Alignment:
| Q |
9 |
agaagcaaagggaaattgttaatatttctccaacaatcatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatctt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031006 |
agaatcaaagggaaattgttaatatttctccaacaattatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatctt |
24030907 |
T |
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| Q |
109 |
gttctatgcgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaagagaaacttgaaacatttgagagagactcacgaaggagactgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24030906 |
gttctatgcgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaagagaaacttgaaacatttgagagagactcatgaaggagactgtc |
24030807 |
T |
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| Q |
209 |
gtatcgggtcccaaatgttggagagcttttaccagtggcag |
249 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
24030806 |
gtatcgggtcccaaatgttggagagcttgtaccagtggcag |
24030766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 24021513 - 24021356
Alignment:
| Q |
15 |
aaagggaaattgttaatatttctccaacaatcatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatcttgttcta |
114 |
Q |
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| T |
24021513 |
aaagggaaattgttaatatttctccaacaatcatcatcatccaaactgagaactctgaccttaattttcgatgaagggtagct-tctttccc-----caa |
24021420 |
T |
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| Q |
115 |
tgcgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaagagaaacttgaaac |
178 |
Q |
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| T |
24021419 |
cgcgaaactccaccaccttgtaagttccagttaacatgtcaaaaccaaaagagaaatttgaaac |
24021356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 23840424 - 23840279
Alignment:
| Q |
17 |
agggaaattgttaatatttctccaacaatcatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatcttgttctatg |
116 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||| || | ||||||||||||||||||||| || |
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| T |
23840424 |
agggaaaatgttgatatttctccaacaatcatca---tccaaattgggaactctgacctgacttttcaatagaccatggttgtctttatcttgttctttg |
23840328 |
T |
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| Q |
117 |
cgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaag |
165 |
Q |
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| T |
23840327 |
tgaaactccaacacattgtaagttccagttaaaatgtcacagccaaaag |
23840279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23847501 - 23847646
Alignment:
| Q |
17 |
agggaaattgttaatatttctccaacaatcatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatcttgttctatg |
116 |
Q |
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||||||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| | ||| || | |||||||||||||||| ||| |
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| T |
23847501 |
agggaaagtgtttgtatttctccagcaatcatca---tctaaattgagaactctgacctgacttttcaatagaccatggttgtctttatctttctcttca |
23847597 |
T |
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| Q |
117 |
cgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaag |
165 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23847598 |
cgaaactccaccaccttgtaagttccagttaaaatgtcacaaccaaaag |
23847646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 11345437 - 11345590
Alignment:
| Q |
14 |
caaagggaaattgttaatatttctccaacaatcatcagcatccaaattgagaacactgacctgacttcttaatggaacgtggttgtctttatcttgttct |
113 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |||| ||||||| |||||| ||||||| ||||| || ||| ||| |||| ||||| |
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| T |
11345437 |
caaaggaaaactgttaatatttctccaacaatcatcact---caaactgagaactctgacccgacttctccatggagagttgtttccttcatctcgttct |
11345533 |
T |
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| Q |
114 |
atgcgaaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaagagaaa |
170 |
Q |
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| T |
11345534 |
gcgcaaaactctaccaccttgtaagtttcggttaaaatgtcacaaccaaaagtgaaa |
11345590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 11338911 - 11338947
Alignment:
| Q |
14 |
caaagggaaattgttaatatttctccaacaatcatca |
50 |
Q |
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| T |
11338911 |
caaaggaaaactgttaatatttctccaacaatcatca |
11338947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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