View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_80 (Length: 250)
Name: NF15182_high_80
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_80 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 1403901 - 1403660
Alignment:
| Q |
9 |
gataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1403901 |
gataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgc |
1403802 |
T |
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| Q |
109 |
gattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgattcaggatccacccaattttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1403801 |
gattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgattcaggatccacccaattttg |
1403702 |
T |
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| Q |
209 |
tttataatctcttgtagtgttcaaatcctgtcaattggtgcc |
250 |
Q |
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| T |
1403701 |
tttataatctcttgtagtgttcaaatcctgtcaattggtgcc |
1403660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 1400179 - 1399945
Alignment:
| Q |
10 |
ataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcg |
109 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
1400179 |
ataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaaactcttgcattctgcagaataaaccttgctaacataatgcg |
1400080 |
T |
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| Q |
110 |
attacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgattcaggatccacccaattttgt |
209 |
Q |
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| T |
1400079 |
attacgttgttggcct---tcatcaaagtcccgcatattgcaagttgtaaggtttaatgaaagacaacttggaacagattcaggatccacccaattttg- |
1399984 |
T |
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| Q |
210 |
ttataatctcttgtagtgttcaaatcctgtcaattggtgcc |
250 |
Q |
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| T |
1399983 |
--caaacctcttgtagtgctgaaatcctgtcaattggtgcc |
1399945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 965155 - 965299
Alignment:
| Q |
40 |
tgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtc |
139 |
Q |
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| T |
965155 |
tgtagcaccacattgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtc |
965254 |
T |
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| Q |
140 |
ccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaac |
184 |
Q |
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| T |
965255 |
ccacatagtgcaagttgtaaggtttgatgtaagacaacttggaac |
965299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 821463 - 821321
Alignment:
| Q |
47 |
ccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcata |
146 |
Q |
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|||||||| |||||||||||||||||| ||||| | ||||||||| |||||||||||||| |||||| |||||| || ||| |||||||||||||| |
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| T |
821463 |
ccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcata |
821364 |
T |
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| Q |
147 |
ttgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
189 |
Q |
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| T |
821363 |
gtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt |
821321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 957801 - 957974
Alignment:
| Q |
51 |
attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgc |
150 |
Q |
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||||||| ||||||||||||||| ||||| | ||||||||| |||||| |||| |||||| |||||| || ||| |||||||||||||| ||| |
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| T |
957801 |
attgacaaagtttctaaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgc |
957900 |
T |
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| Q |
151 |
aagttgtaaggtttaatgaaaggcaacttggaactgattcaggatccacccaattttgtttataatctcttgta |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |
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| T |
957901 |
aagttgtaaggtttaatgaaaggcaacttggaactgatttaggatttacccaattttgcatatcatctcttgta |
957974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 973727 - 973864
Alignment:
| Q |
47 |
ccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcata |
146 |
Q |
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||||||| |||||||| |||||||||||| || ||||||||||| ||||||||||||||| ||||||| |||||| || || ||||||||| |||| |
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| T |
973727 |
ccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacata |
973826 |
T |
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| Q |
147 |
ttgcaagttgtaaggtttaatgaaaggcaacttggaac |
184 |
Q |
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||||||||||||||||| ||| ||| ||||||||||| |
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| T |
973827 |
gtgcaagttgtaaggtttgatgtaagacaacttggaac |
973864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 410645 - 410447
Alignment:
| Q |
9 |
gataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgc |
108 |
Q |
| |
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||||||| ||||||| |||||| | | |||||| |||| |||| | ||||||| ||||||||||||||| | |||||||| |||||||||||||| |
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| T |
410645 |
gataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgt |
410546 |
T |
|
| Q |
109 |
gattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgattcaggatccacccaatttt |
207 |
Q |
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|| | | ||| || || ||| | |||||||| ||| ||||||||||||||||||| |||| |||| |||||| |||| | |||||||||||||| |
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| T |
410545 |
gacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaacaaattcggaatccacccaatttt |
410447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 45810196 - 45810341
Alignment:
| Q |
44 |
gcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgc |
143 |
Q |
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|||||| |||| |||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||| ||| | || ||| ||||||||||| |
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| T |
45810196 |
gcaccaaattgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgc |
45810295 |
T |
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| Q |
144 |
atattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
189 |
Q |
| |
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||| ||||||| || |||||||||||||||||| ||||||| |||| |
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| T |
45810296 |
atagtgcaagtcgtgaggtttaatgaaaggcaagttggaacagatt |
45810341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 10116464 - 10116603
Alignment:
| Q |
45 |
caccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgca |
144 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| || ||||||||||| |||| ||||||| ||| || ||| || || || |||| ||||||| |
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| T |
10116464 |
caccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgca |
10116563 |
T |
|
| Q |
145 |
tattgcaagttgtaaggtttaatgaaaggcaacttggaac |
184 |
Q |
| |
|
|| | ||||||||||||||| ||||||| |||| |||||| |
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| T |
10116564 |
tagtacaagttgtaaggtttgatgaaagacaacctggaac |
10116603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 12105641 - 12105495
Alignment:
| Q |
43 |
agcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccg |
142 |
Q |
| |
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||||||||||||||||| ||||||||||| ||| ||| | ||||||||| |||||||||||||| ||| || ||| || || ||| ||||||| || |
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| T |
12105641 |
agcaccagattgacatattttctaaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacg |
12105542 |
T |
|
| Q |
143 |
catattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
189 |
Q |
| |
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|| | |||||| |||||||| |||||||||||| |||||| |||| |
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| T |
12105541 |
gatcgtacaagttctaaggtttgatgaaaggcaacctggaacagatt |
12105495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 1459135 - 1459187
Alignment:
| Q |
137 |
gtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
189 |
Q |
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|||||||| | |||||||||||||||||||| |||||||| |||||| |||| |
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| T |
1459135 |
gtcccgcaaagtgcaagttgtaaggtttaataaaaggcaagatggaacagatt |
1459187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 36199448 - 36199394
Alignment:
| Q |
51 |
attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa |
105 |
Q |
| |
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|||| |||||||| ||||||||||||||||| |||||| | ||||||||||||| |
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| T |
36199448 |
attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa |
36199394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 48675164 - 48675232
Alignment:
| Q |
38 |
cttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataat |
106 |
Q |
| |
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||||| || ||| |||| |||||||| ||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
48675164 |
cttgtcgctccatattgtcatagtttgtaaaacttttgcattatttagaatatatcttgctaacataat |
48675232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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