View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_high_81 (Length: 249)
Name: NF15182_high_81
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_81 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4681164 - 4680916
Alignment:
| Q |
1 |
aaagcaccactatggctaaactcgctcaatacttcaacctggtataattactctc--aacttcttattttcagttgatttt--gggggttctcaattcaa |
96 |
Q |
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| T |
4681164 |
aaagcaccactatggctaaactcgctcaatacttcaacctggtataaatactctctcaacttcttattttcagtggattttttgggggttctcaattcaa |
4681065 |
T |
|
| Q |
97 |
aacttagcatgctctaatattataatttaataattaataattatacagacaactataaacttactttagctaggttattttttatatggtggttgtttca |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4681064 |
aacttagcatgctctaatattacaatttaataattaataattatacagacaactataaacttactttagctaggttcttttttatatggtggttgtttca |
4680965 |
T |
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| Q |
197 |
gtatatatgacaaaatagtcgaatattatggtggacgtttcatctcact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4680964 |
gtatatatgacaaaatagtcgaatattatggtggacgtttcatatcact |
4680916 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2581475 - 2581534
Alignment:
| Q |
1 |
aaagcaccactatggctaaactcgctcaatacttcaacctggtataattactctcaactt |
60 |
Q |
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|||||||||||||||||||| |||| |||| ||||||||||||||| ||| | |||||| |
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| T |
2581475 |
aaagcaccactatggctaaaagcgctgaatatttcaacctggtataaatacacacaactt |
2581534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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