View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_87 (Length: 240)

Name: NF15182_high_87
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_87
NF15182_high_87
[»] chr3 (3 HSPs)
chr3 (1-221)||(23874062-23874282)
chr3 (106-176)||(23818602-23818672)
chr3 (19-104)||(32072174-32072259)
[»] chr6 (5 HSPs)
chr6 (40-179)||(5041474-5041613)
chr6 (102-175)||(14528394-14528467)
chr6 (102-175)||(14533120-14533193)
chr6 (136-184)||(33185491-33185539)
chr6 (127-175)||(23066096-23066144)
[»] chr2 (6 HSPs)
chr2 (65-182)||(16241860-16241977)
chr2 (89-179)||(37445107-37445198)
chr2 (89-185)||(37437002-37437099)
chr2 (1-62)||(42246250-42246311)
chr2 (85-179)||(36778447-36778541)
chr2 (64-184)||(17568594-17568714)
[»] chr7 (3 HSPs)
chr7 (22-185)||(36363464-36363627)
chr7 (109-179)||(4077303-4077373)
chr7 (64-110)||(39931671-39931717)
[»] chr8 (2 HSPs)
chr8 (90-185)||(24084510-24084605)
chr8 (136-189)||(37434187-37434240)
[»] chr5 (1 HSPs)
chr5 (117-175)||(6020774-6020832)
[»] chr4 (4 HSPs)
chr4 (92-183)||(13158811-13158902)
chr4 (126-176)||(29328812-29328862)
chr4 (66-127)||(14137659-14137720)
chr4 (100-176)||(29553785-29553861)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23874062 - 23874282
Alignment:
Q  1 ctgcacgttaggaacaagtgttgagcatcctcaacatgaccacaaccagccacgcaccatcacgcctctgtagagatgacacctcgagtcgccaagtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23874062 ctgcacgttaggaacaagtgttgagcatcctcaacatgaccacaaccagccacgcaccatcacgcctctgtagagatgacacctcgagtcgccaagtttg 23874161  T
Q  101 attttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaattccatatttgagtgcactga 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23874162 attttgttggcaatatatcacgaagcagcctccacgcaaaaatagagaccttcaaagggacttgattatgccaaattaattccatatttgagtgcactga 23874261  T
Q  201 tgcatgctacttggatgccag 221  Q
    |||||||||||||||||||||    
T  23874262 tgcatgctacttggatgccag 23874282  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 23818602 - 23818672
Alignment:
Q  106 gttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaat 176  Q
    ||||||||| | |||||||||| |||| | ||||| |||||||||||||| || || ||||||||||||||    
T  23818602 gttggcaatctgtcacgaagcaacctctaggcaaagatagagactttcaacggcacctgattatgccaaat 23818672  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 32072259 - 32072174
Alignment:
Q  19 tgttgagcatcctcaacatgaccacaaccagccacgcaccatcacgcctctgtagagatgacacctcgagtcgccaagtttgattt 104  Q
    |||||||| ||||| || ||||||||||||| ||| ||| | ||||||||||  ||||  ||||| ||| ||||||| ||||||||    
T  32072259 tgttgagcgtcctccacctgaccacaaccaggcacacacaaacacgcctctggggagagaacaccacgattcgccaaatttgattt 32072174  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 5041474 - 5041613
Alignment:
Q  40 ccacaaccagccacgcaccatcacgcctctgtagagatgacacctcgagtcgccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaa 139  Q
    ||||| |||||||| ||| |||  ||||||| |||||||||||| ||||||||||  |||||||||||||| ||| |||||||||||| || ||||||||    
T  5041474 ccacacccagccacacacaatcgtgcctctgcagagatgacaccacgagtcgccagttttgattttgttggtaatctatcacgaagcatccaccacgcaa 5041573  T
Q  140 aaatagagactttcaaagggacttgattatgccaaattaa 179  Q
    |||||||||  ||||| || || || ||||||||||||||    
T  5041574 aaatagagatcttcaagggaacctgcttatgccaaattaa 5041613  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 14528394 - 14528467
Alignment:
Q  102 ttttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaa 175  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||  ||||| |||||||| || |||||||||||||    
T  14528394 ttttgttggaaatctatcgcgaagcaacctccacgcaaaaactgagaccttcaaaggaacctgattatgccaaa 14528467  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 14533120 - 14533193
Alignment:
Q  102 ttttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaa 175  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||  |||||||| |  |||||||||||||    
T  14533120 ttttgttggaaatttatcacgaagcaacctccacgcaaaaactgagaacttcaaaggaaactgattatgccaaa 14533193  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 33185491 - 33185539
Alignment:
Q  136 gcaaaaatagagactttcaaagggacttgattatgccaaattaattcca 184  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||    
T  33185491 gcaaaaatagagactttcagagggacatgtttatgccaaattaattcca 33185539  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 23066144 - 23066096
Alignment:
Q  127 agcctccacgcaaaaatagagactttcaaagggacttgattatgccaaa 175  Q
    |||||||| |||||||  ||||| |||||||| ||||||||||||||||    
T  23066144 agcctccaagcaaaaactgagaccttcaaaggaacttgattatgccaaa 23066096  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 16241860 - 16241977
Alignment:
Q  65 cctctgtagagatgacacctcgagtcgccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttg 164  Q
    |||||| | |||||||||| ||||||||||| |||| ||||||||| | | ||||||| ||||||||||||||||||||||| || |||||||  || ||    
T  16241860 cctctgcaaagatgacaccacgagtcgccaattttgtttttgttggaagtctatcacgcagcagcctccacgcaaaaatagaaaccttcaaagttacctg 16241959  T
Q  165 attatgccaaattaattc 182  Q
     || ||| ||||||||||    
T  16241960 cttgtgctaaattaattc 16241977  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 37445107 - 37445198
Alignment:
Q  89 tcgccaagtttgattttgttggcaatttatcacgaagcagcctccacg-caaaaatagagactttcaaagggacttgattatgccaaattaa 179  Q
    ||||||| |||||||||||||| | | ||||||| |||||||||||||  |||||| || || |||||||||||||| | ||||||||||||    
T  37445107 tcgccaaatttgattttgttggtagtctatcacgtagcagcctccacgaaaaaaattgacaccttcaaagggacttgctcatgccaaattaa 37445198  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 37437002 - 37437099
Alignment:
Q  89 tcgccaagtttgattttgttggcaatttatcacgaagcagcctccacg-caaaaatagagactttcaaagggacttgattatgccaaattaattccat 185  Q
    ||||||| |||||||||||||  | | ||||||| |||||||||||||  ||||||| | || ||||||||||| || ||||| |||||||| |||||    
T  37437002 tcgccaaatttgattttgttgatagtctatcacgtagcagcctccacgaaaaaaatatacaccttcaaagggacctgcttatgtcaaattaaatccat 37437099  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42246250 - 42246311
Alignment:
Q  1 ctgcacgttaggaacaagtgttgagcatcctcaacatgaccacaaccagccacgcaccatca 62  Q
    |||||||||||||||| ||| ||||   ||| ||||||||||||||||||||| ||||||||    
T  42246250 ctgcacgttaggaacaggtgctgagagccctaaacatgaccacaaccagccacacaccatca 42246311  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 36778541 - 36778447
Alignment:
Q  85 cgagtcgccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaa 179  Q
    ||||| ||||| ||||| || ||||||||| |  |||||||||  |||||||| ||||  || ||||||||||| || ||||||||||| |||||    
T  36778541 cgagttgccaaatttgacttagttggcaatctgacacgaagcaatctccacgccaaaaccgaaactttcaaaggcacctgattatgccagattaa 36778447  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 17568714 - 17568594
Alignment:
Q  64 gcctctgtagagatgacacctcgagtcgccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggactt 163  Q
    ||||||| |||||||||||| ||| | ||||| |||  ||||||||||||| ||||||| | ||  | ||| ||||||| | |||| ||||| || || |    
T  17568714 gcctctggagagatgacaccgcgatttgccaaatttatttttgttggcaatctatcacgtaacattcgccaagcaaaaacaaagaccttcaagggaacct 17568615  T
Q  164 gattatgccaaattaattcca 184  Q
      |||||||||||||| ||||    
T  17568614 acttatgccaaattaaatcca 17568594  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 36363464 - 36363627
Alignment:
Q  22 tgagcatcctcaacatgaccacaaccagccacgcaccatcacgcctctgtagagatgacacctcgagtcgccaagtttgattttgttggcaatttatcac 121  Q
    |||||||| || || ||||||||  ||||||| ||| | |  |||||| |||| |||||||| ||| |||| |  |||||||| ||||| ||| ||||||    
T  36363464 tgagcatcttcgacgtgaccacacacagccacacacaaccgtgcctctatagaaatgacaccacgaatcgctagttttgatttagttggtaatctatcac 36363563  T
Q  122 gaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaattccat 185  Q
      |||| ||||||||||||||||||||| || || || || || |||||||||||||| |||||    
T  36363564 ttagcatcctccacgcaaaaatagagacctttaagggaacctgcttatgccaaattaaatccat 36363627  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 4077303 - 4077373
Alignment:
Q  109 ggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaa 179  Q
    |||||| |||||||||||| |||||| ||||||||||| || ||||| || || || ||||||||||||||    
T  4077303 ggcaatctatcacgaagcaacctccaagcaaaaatagaaaccttcaacggcacctggttatgccaaattaa 4077373  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 39931717 - 39931671
Alignment:
Q  64 gcctctgtagagatgacacctcgagtcgccaagtttgattttgttgg 110  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||||||    
T  39931717 gcctctgtagagatgacaccacgagttgccagttttgattttgttgg 39931671  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 24084510 - 24084605
Alignment:
Q  90 cgccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaattccat 185  Q
    |||||| |||||||| ||||||||| ||||||||||||||| |||  ||||||| || || || || || || |  ||||||||||||||||||||    
T  24084510 cgccaaatttgatttagttggcaatctatcacgaagcagccgccattcaaaaattgacaccttaaacggaacctatttatgccaaattaattccat 24084605  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 37434187 - 37434240
Alignment:
Q  136 gcaaaaatagagactttcaaagggacttgattatgccaaattaattccatattt 189  Q
    |||| |||||||||||| ||||| || || |||||||||||||| |||||||||    
T  37434187 gcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattt 37434240  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 6020774 - 6020832
Alignment:
Q  117 atcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaa 175  Q
    ||||||||  |||||||||||||||| | |||||||||| ||||| |||||||||||||    
T  6020774 atcacgaataagcctccacgcaaaaacatagactttcaaggggacctgattatgccaaa 6020832  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 13158902 - 13158811
Alignment:
Q  92 ccaagtttgattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaattaattcc 183  Q
    |||| |||||||| || || ||| ||||||| |||||||||||||||||||  ||||| |||||||| || |  | |||||||| |||||||    
T  13158902 ccaaatttgatttggtgggtaatctatcacgtagcagcctccacgcaaaaacggagaccttcaaaggtacctactgatgccaaactaattcc 13158811  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 29328862 - 29328812
Alignment:
Q  126 cagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaat 176  Q
    |||||| ||| |||||||||| ||||||| ||||||||| |||||||||||    
T  29328862 cagcctacacacaaaaatagaaactttcagagggacttgtttatgccaaat 29328812  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 14137659 - 14137720
Alignment:
Q  66 ctctgtagagatgacacctcgagtcgccaagtttgattttgttggcaatttatcacgaagca 127  Q
    ||||| |||||||||||| ||||||||||  |||| ||||||| | ||| ||||||||||||    
T  14137659 ctctgaagagatgacaccgcgagtcgccagatttgtttttgtttgtaatctatcacgaagca 14137720  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 29553861 - 29553785
Alignment:
Q  100 gattttgttggcaatttatcacgaagcagcctccacgcaaaaatagagactttcaaagggacttgattatgccaaat 176  Q
    ||||| ||||||||   ||||||||| |||||||| |||||||| ||||||||||| || || ||  ||||||||||    
T  29553861 gatttggttggcaaacgatcacgaagtagcctccaagcaaaaattgagactttcaacggaacctgcctatgccaaat 29553785  T

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