View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_high_9 (Length: 595)
Name: NF15182_high_9
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 257 - 580
Target Start/End: Original strand, 12231326 - 12231650
Alignment:
| Q |
257 |
gccttcttggtcccaattttatttaacaatagtcaaaccacnnnnnnnnnnnngcagcaacaaagttcaaacgaattaaatgttattatttatttacata |
356 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12231326 |
gccttcttggtcccaattttagttaacaatagtcaaaccacaaaaagaaaaaagcagcaacaaagttcaaacgaattaaatgttattatttatttacata |
12231425 |
T |
|
| Q |
357 |
aaactatcagtgtcagcagaaataaacttcaacaacaataactctagcaaaagaaaatatatatctagcaatgacacttcagattaaaattctgtctgat |
456 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12231426 |
aaactatcagcgtcagcagaaataaacttcaacaacaataactctagcaaaagaaaatatatatctagcaatgacacttgagattaaaattctgtctgat |
12231525 |
T |
|
| Q |
457 |
gtcatgccaaacacgatatcacgcctcaacttatctgcaacttatagcacaaacgcttattattataaacagttatttttataac--aaaataaaataaa |
554 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
12231526 |
gtcatgccaaacacgacatcacgcatcaacttatctgcaacttatagcacaaacgcttattattataaaca-ttatttctataacaaaaaataaaataaa |
12231624 |
T |
|
| Q |
555 |
gtaaaattgcaataagctgtttttat |
580 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
12231625 |
gtaaaattgcaataagctgcttttat |
12231650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 12231083 - 12231261
Alignment:
| Q |
14 |
cataggattaacataataagactataaacttactgcacttttatagttaaggtacaattcttccatcccttcagcaatagtggggggcaaagttccggct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12231083 |
cataggattaacataataagactataaacttactgcacttttatagttaaggtacaattcttccatcccttcagcaatagtggggggcaaagttccggct |
12231182 |
T |
|
| Q |
114 |
tctacttccttcttaattccagaaagaacatctgcaaacaaacaaatcaatatgacaaaaaattaacactaataatact |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12231183 |
tctacttccttcttaattccagaaagaacatctgcaaacaaacaaatcaatgtgacaaaaaattaacactaataatact |
12231261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University