View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_high_96 (Length: 224)

Name: NF15182_high_96
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_high_96
NF15182_high_96
[»] chr5 (2 HSPs)
chr5 (1-224)||(20334045-20334270)
chr5 (1-199)||(17793388-17793585)
[»] chr4 (5 HSPs)
chr4 (1-224)||(25428516-25428741)
chr4 (1-199)||(1541266-1541463)
chr4 (42-200)||(16937850-16938007)
chr4 (29-200)||(15537490-15537660)
chr4 (100-161)||(56360994-56361055)
[»] chr1 (2 HSPs)
chr1 (1-224)||(49211075-49211300)
chr1 (1-199)||(26400899-26401096)
[»] chr6 (2 HSPs)
chr6 (1-199)||(7033968-7034165)
chr6 (29-200)||(26254043-26254213)
[»] chr8 (2 HSPs)
chr8 (27-200)||(18011216-18011388)
chr8 (29-200)||(43441676-43441846)
[»] chr7 (4 HSPs)
chr7 (29-200)||(8986010-8986180)
chr7 (29-200)||(35973027-35973197)
chr7 (29-200)||(35994439-35994609)
chr7 (29-200)||(43582891-43583061)
[»] scaffold0012 (1 HSPs)
scaffold0012 (80-172)||(154287-154379)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20334270 - 20334045
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  20334270 aatggatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtaaaaattgaggcttacctagaagct 20334171  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  20334170 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaactatggctcagttgaaatatcac-aaggagagaaaaact 20334072  T
Q  201 ---aaggtgaaagcaaaatcatgtctc 224  Q
       |||| |||||||||||||||||||    
T  20334071 aagaaggcgaaagcaaaatcatgtctc 20334045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17793388 - 17793585
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||  ||||||| ||||||||||| |||||||||||||||    
T  17793388 aatggatgatgagtcaagtttttcaaaagttgctcctcctctctttgatgggaacaattatgacatttgggctgtcaaaatggaagcttacctagaagct 17793487  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaac 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| | |||| ||||||| ||||||    
T  17793488 ttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcaattgaagtttcac-aaggagaaaaaaac 17793585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25428516 - 25428741
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25428516 aatggatgatgagtcaggtttttcaaaagttgctcctcctctctttgatgggaacaactatgaactttgggcagtaaaaatggaggcttacctagaagct 25428615  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25428616 ttggaagtttgggaagccatagaagaagattatgaagttcctccactgccgaataatccaactatgactcagttgaaatatcac-aaggagagaaaaact 25428714  T
Q  201 ---aaggtgaaagcaaaatcatgtctc 224  Q
       |||| |||||||||||||||||||    
T  25428715 aagaaggcgaaagcaaaatcatgtctc 25428741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1541266 - 1541463
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  1541266 aatggatgatgagtcaggtttttcaaaagttgctcctcctctctttgatgggaacaactatgacatttgggctgtcaaaatggaggcttacctagaagct 1541365  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaac 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| ||||||| ||||||    
T  1541366 ttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcagttgaagtttcac-aaggagaaaaaaac 1541463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 16937850 - 16938007
Alignment:
Q  42 tctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagaggattatgaagttcc 141  Q
    ||||||||||| | ||||||||  | |||| ||| | ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||| | |||||    
T  16937850 tctttgatggggagaactatgacatgtgggaagtaagaatggagtcttacctagaggctttggatgtttgggaggccattgaagaggattataatgttcc 16937949  T
Q  142 tccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  16937950 tccgctgccgaataatcctaccatggctcagttaaaatatcac-aaggagagaaaaact 16938007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 15537490 - 15537660
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||| ||||||||||| | |||||||| ||||||||||| | ||||||| | ||| | || ||||||||||||||||| |   | |||||||    
T  15537490 gttgctcctcctgtctttgatggggagaactatgacctttgggcagtaagaatggagccatacttggaggctttggatgtttgggaggttgttgaagagg 15537589  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  15537590 attatgaagttcctccgctgcagaataatcctaccatggctcagttaaaatatcac-aaggagagaaaaact 15537660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 56361055 - 56360994
Alignment:
Q  100 tttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaa 161  Q
    |||||| ||||||||||||||| |||| |||||| |  |||||||| || ||||||||||||    
T  56361055 tttggacgtttgggaagccataaaagaagattatcagattcctccattgtcgaataatccaa 56360994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49211075 - 49211300
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  49211075 aatggatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgagaacaactatgaactttgagcagtaaaaatggaggcttacctagaagct 49211174  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  49211175 ttggaagtttgggaagccatagaagaggattataaagttcctccactgccgaataatccaactatggctcagttgaaatatcac-aaggagaaaaaaact 49211273  T
Q  201 ---aaggtgaaagcaaaatcatgtctc 224  Q
       |||| |||| ||||||||||||||    
T  49211274 aagaaggcgaaaacaaaatcatgtctc 49211300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 26400899 - 26401096
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  26400899 aatggatgatgagtcaggtttttcaaaagttgctcctcctctctttgatgggaacaactatgacatttgggctgtcaaaatggaggcttacctagaagct 26400998  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaac 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| ||||||| ||||||    
T  26400999 ttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcagttgaagtttcac-aaggagaaaaaaac 26401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7033968 - 7034165
Alignment:
Q  1 aatgaatgatgagtcaaatttttcaaaagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagct 100  Q
    |||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  7033968 aatggatgatgagtcaggtttttcaaaagttgctcctcctctctttgatgggaacaactatgacatttgggctgtcaaaatggaggcttacctagaagct 7034067  T
Q  101 ttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaac 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| ||||||| ||||||    
T  7034068 ttggacgtttgggaagccatagaagaggattatgaagttcctccgctgccaaataatccaactatggctcagttgaagtttcac-aaggagaaaaaaac 7034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 26254043 - 26254213
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||| ||| | |||||||    
T  26254043 gttgctcctcccgtctttgatggggagaactatgacctttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagagg 26254142  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  26254143 attatgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 26254213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 18011216 - 18011388
Alignment:
Q  27 aagttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaaga 126  Q
    ||||||| |||||| ||||||||||| | |||||| | ||||||||||| | ||||||| ||||||| || ||||||||||||||||| ||  | |||||    
T  18011216 aagttgctcctcctgtctttgatggggagaactataacctttgggcagtaagaatggagtcttacctggaggctttggatgtttgggaggctgttgaaga 18011315  T
Q  127 ggattatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  18011316 ggattatgaagttcctccgctgcagaataatcctaccatggctcagttaaaatatcac-aaggagagaaaaact 18011388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 43441676 - 43441846
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||| ||| | |||||||    
T  43441676 gttgctcctcccgtctttgatggggagaactatgacctttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagagg 43441775  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||| |||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  43441776 attttgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 43441846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 8986010 - 8986180
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||| ||| | ||||| |    
T  8986010 gttgctcctcccgtctttgatggggagaactatgacctttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagatg 8986109  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  8986110 attatgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 8986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 35973197 - 35973027
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||| ||| | |||||||    
T  35973197 gttgctcctcccgtctttgatggggagaactatgacctttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagagg 35973098  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||| |||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  35973097 attgtgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 35973027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 35994609 - 35994439
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||| ||| | |||||||    
T  35994609 gttgctcctcccgtctttgatggggagaactatgacctttgggcagtaagaatggagtcttacctagaggctttggatgtttgggaggccgttgaagagg 35994510  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    ||| |||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  35994509 attgtgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 35994439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 43582891 - 43583061
Alignment:
Q  29 gttgcccctcctctctttgatgggaacaactatgaactttgggcagtcaaaatggaggcttacctagaagctttggatgtttgggaagccatagaagagg 128  Q
    ||||| |||||  ||||||||||| | |||||||| |||| |||||| | ||||||| |||||||||| ||||||||||||||||| | | | |||||||    
T  43582891 gttgctcctcccgtctttgatggggagaactatgacctttaggcagtaagaatggagtcttacctagaggctttggatgtttgggaggtcgttgaagagg 43582990  T
Q  129 attatgaagttcctccactgccgaataatccaaccatggctcagttgaaatatcacaaaggagagaaaaact 200  Q
    |||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  43582991 attatgaagttcttccgctgccgaataatcctaccatggctcaattaaaatatcac-aaggagagaaaaact 43583061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 154379 - 154287
Alignment:
Q  80 atggaggcttacctagaagctttggatgtttgggaagccatagaagaggattatgaagttcctccactgccgaataatccaaccatggctcag 172  Q
    ||||| || |||||||| ||||| ||| |||||||||   | ||||| |||||||| |||||||| || || || ||||| ||||||||||||    
T  154379 atggaagcctacctagatgctttagatctttgggaagatgtggaagaagattatgatgttcctccgcttccaaagaatcccaccatggctcag 154287  T

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