View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_1 (Length: 930)
Name: NF15182_low_1
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_1 |
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| [»] scaffold0375 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 857; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 18 - 915
Target Start/End: Original strand, 5981190 - 5982087
Alignment:
| Q |
18 |
agtattaaaaaacaaaatgataagtgtatagaaaatcctccccctatcagtttcttttttccataaatgcannnnnnngacctccaatctttctgatgtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5981190 |
agtattaaaaaacaaaatgataagtgtatagaaaatcctccccctatcagtttcttttttccataaatgcatttttttgacctccaatctttctgatgtc |
5981289 |
T |
|
| Q |
118 |
aaggtttgctttccctcaattgtgagggtttcagatcttgtataattctcatctaatttctaattgtgtgtatatatgtgtaatgtgtttttcttgggtt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5981290 |
aaggtttgctttccttcaattgtgagggtttcagatcttgtataattctcatctaatttctaattgtgtgtatatatgtgtaatgtgttttttttgggtt |
5981389 |
T |
|
| Q |
218 |
tgaatttttaatgagtaaataatgggtgaggtcgaggcaaattgttactgggtcttattctcttgttgattcatttgtgccgaagaagttgagataacac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981390 |
tgaatttttaatgagtaaataatgggtgaggtcgaggcaaattgttactgggtcttattctcttgttgattcatttgtgccgaagaagttgagataacac |
5981489 |
T |
|
| Q |
318 |
tacaaaatcaaatttcgtcaagataggaggctaaaagtgcattatgattttttatagtctactttccaattgtcacgggaaagaaatcatgatactgttg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981490 |
tacaaaatcaaatttcgtcaagataggaggctaaaagtgcattatgattttttatagtctactttccaattgtcacgggaaagaaatcatgatactgttg |
5981589 |
T |
|
| Q |
418 |
tttcacaatatatatgtaatcgaggcaagtccatcagtccatcacatttaagagaaacaattcatcttatgacgacatttttgcataacttgttttctcg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981590 |
tttcacaatatatatgtaatcgaggcaagtccatcagtccatcacatttaagagaaacaattcatcttatgacgacatttttgcataacttgttttctcg |
5981689 |
T |
|
| Q |
518 |
accgataatctaatgacaagaatcacatactttaagattaggcaagtggataattgcgaatttgaatccacgctttaacatatttgtttatttctcttcc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5981690 |
accgataatctaatgacaagaatcacatactttaagattaggcaagtggataattgcgaatttgaatccatgctttaacatatttgtttatttctcttcc |
5981789 |
T |
|
| Q |
618 |
ttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgcttgt |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981790 |
ttgaatcattacgaatttggcatgagtcggtgaaagtattgttaccttttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgcttgt |
5981889 |
T |
|
| Q |
718 |
acttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagagagaacttaggtttgcagtttaggattttgtacggtg |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981890 |
acttgtcaacatgaacatatctcctctggttttgggtgctagccaagccaccagaggttcagagagaacttaggtttgcagtttaggattttgtacggtg |
5981989 |
T |
|
| Q |
818 |
gtaactaaattctgtacaagtgagttctatttatagacttaattctgcgcaagtgagttctatttatagactcacatgtgtgtaccatatagcctatg |
915 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5981990 |
gtaactaaattctgtacaagtgagttctatttatagacttaattctgcgcaagtgagttctatttatagactcacatgtgtgtaccatatagcctatg |
5982087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 871 - 915
Target Start/End: Original strand, 5982143 - 5982187
Alignment:
| Q |
871 |
tgagttctatttatagactcacatgtgtgtaccatatagcctatg |
915 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5982143 |
tgagttctatttatagactcacatgtgtgtaccatatagcctatg |
5982187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 614 - 783
Target Start/End: Complemental strand, 19820222 - 19820053
Alignment:
| Q |
614 |
ttccttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtagcaatgc |
713 |
Q |
| |
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||||||||||||||| ||||||| || || || || ||||| ||||||||||||||| |||| ||| ||||| |||||||||||||| |||||||||| |
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| T |
19820222 |
ttccttgaatcattatgaatttgacacgaatcagtaaaagtgttgttacctcttgaagtgcatgaacgatttcgttcacaacaaagcaaggtagcaatgc |
19820123 |
T |
|
| Q |
714 |
ttgtacttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagagag |
783 |
Q |
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| T |
19820122 |
ctctactcgtccagacgaacaaatctcctttgattctcggtgctaaccaagcgatcagaggttcagagag |
19820053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 682 - 787
Target Start/End: Original strand, 31651048 - 31651153
Alignment:
| Q |
682 |
atttcaatcacaacaaagcaacgtagcaatgcttgtacttgtcaacatgaacatatctcctctggttttgggtgctggccaagccaccagaggttcagag |
781 |
Q |
| |
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|||||||||||| |||| |||| || |||||| | |||| ||| ||| ||||| ||||||||||||| | |||| ||||||| | ||||||||||||| |
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| T |
31651048 |
atttcaatcacagcaaaacaacataacaatgcctctactcgtccacacgaacagatctcctctggttcccgatgctcgccaagcaatcagaggttcagag |
31651147 |
T |
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| Q |
782 |
agaact |
787 |
Q |
| |
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|||||| |
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| T |
31651148 |
agaact |
31651153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 702
Target Start/End: Original strand, 37031482 - 37031570
Alignment:
| Q |
614 |
ttccttgaatcattacgaatttggcatgagtcggtgaaagtattgttacctcttgaaatgca-aaaacaatttcaatcacaacaaagcaa |
702 |
Q |
| |
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||||||| |||||||||||||| ||||| || |||| || |||||||||||||||| |||| |||| |||||| |||||| |||||||| |
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| T |
37031482 |
ttccttggatcattacgaatttaacatga-tcagtgatagaattgttacctcttgaagtgcagaaaagaatttcgatcacatcaaagcaa |
37031570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 770 - 856
Target Start/End: Original strand, 41315174 - 41315260
Alignment:
| Q |
770 |
agaggttcagagagaacttaggtttgcagtttaggattttgtacggtggtaactaaattctgtacaagtgagttctatttatagact |
856 |
Q |
| |
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|||| ||||||||||||| | |||||| |||| | ||||||| ||||||||| ||||||| | || ||| ||||||||||||||| |
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| T |
41315174 |
agagcttcagagagaactacgatttgcaatttaaggttttgtaaagtggtaactgaattctgcaaaaatgaattctatttatagact |
41315260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0375 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0375
Description:
Target: scaffold0375; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 707
Target Start/End: Complemental strand, 16250 - 16189
Alignment:
| Q |
647 |
gtgaaagtatt-gttacctcttgaaatgcaaaaacaatttcaatcacaacaaagcaacgtag |
707 |
Q |
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||||||||||| ||||||||||||| | || |||||||||| |||| || |||||||||||| |
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| T |
16250 |
gtgaaagtatttgttacctcttgaagtacataaacaatttcgatcataaaaaagcaacgtag |
16189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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