View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_100 (Length: 237)

Name: NF15182_low_100
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_100
NF15182_low_100
[»] chr2 (2 HSPs)
chr2 (98-221)||(16485812-16485935)
chr2 (1-38)||(16485934-16485971)
[»] chr3 (5 HSPs)
chr3 (3-82)||(5301990-5302069)
chr3 (2-77)||(10876180-10876255)
chr3 (3-83)||(24678126-24678206)
chr3 (24-83)||(24719557-24719616)
chr3 (94-217)||(5302099-5302221)
[»] chr1 (1 HSPs)
chr1 (3-83)||(19242437-19242517)
[»] chr7 (2 HSPs)
chr7 (5-82)||(20528496-20528573)
chr7 (90-221)||(2653402-2653532)
[»] chr5 (1 HSPs)
chr5 (128-221)||(26619398-26619491)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 16485935 - 16485812
Alignment:
Q  98 taatcctttcttagctgacatgatgtaatatccctcctcaagttggagattgatagatatcaatcattgcaagcttgaataataaagtatgaaaaggctg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  16485935 taatcctttcttagctgacatgatgtaatatccctcctcaagttggagattgatagatatcaatcattgcaggcttggataataatgtatgaaaaggctg 16485836  T
Q  198 aggaagtagagatttggtgaagaa 221  Q
    ||||||||||||||||||||||||    
T  16485835 aggaagtagagatttggtgaagaa 16485812  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16485971 - 16485934
Alignment:
Q  1 tcatgtgtaacaaacacaagatcactaactcttaacta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16485971 tcatgtgtaacaaacacaagatcactaactcttaacta 16485934  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 5301990 - 5302069
Alignment:
Q  3 atgtgtaacaaacacaagatcactaactcttaactatctaatgattacttgttgcacaggtaatcattctctaactaact 82  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  5301990 atgtgtagcaaacacaagatcgctaactcttaactatctaatgaatacttgttgcacaaataatcattctctaactaact 5302069  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 10876180 - 10876255
Alignment:
Q  2 catgtgtaacaaacacaagatcactaactcttaactatctaatgattacttgttgcacaggtaatcattctctaac 77  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10876180 catgtgtaacaaacacaatatcactaagtcttaactatataatgattacttgttgcacaagtaatcattctctaac 10876255  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 24678206 - 24678126
Alignment:
Q  3 atgtgtaacaaacacaagatcactaactcttaactatctaatgattacttgttgcacaggtaatcattctctaactaactg 83  Q
    |||||| |||||||  ||||| ||||||||||||||| |||||||| ||| || |||| ||||||||||||||||||||||    
T  24678206 atgtgtgacaaacatgagatcgctaactcttaactatttaatgattccttattacacacgtaatcattctctaactaactg 24678126  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 24719616 - 24719557
Alignment:
Q  24 actaactcttaactatctaatgattacttgttgcacaggtaatcattctctaactaactg 83  Q
    ||||| ||||||||||||||| ||||| |||| |||  ||||||||||||||||||||||    
T  24719616 actaaatcttaactatctaataattacctgttacactagtaatcattctctaactaactg 24719557  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 5302099 - 5302221
Alignment:
Q  94 caagtaatcctttcttagctgacatgatgtaatatccctcctcaagttggagattgatagatatcaatcattgcaagcttgaataataaagtatgaaaag 193  Q
    ||||||||||||  ||| |||| ||| ||| | ||||| | |||||||||||   |||| |||||||||||  | | |||| |||||| |||||||||||    
T  5302099 caagtaatccttctttaactgatatggtgtgaaatcccgc-tcaagttggaggacgataaatatcaatcatccccaacttggataatagagtatgaaaag 5302197  T
Q  194 gctgaggaagtagagatttggtga 217  Q
    |||||||||| |  ||||||||||    
T  5302198 gctgaggaagcaatgatttggtga 5302221  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 19242517 - 19242437
Alignment:
Q  3 atgtgtaacaaacacaagatcactaactcttaactatctaatgattacttgttgcacaggtaatcattctctaactaactg 83  Q
    |||||||||||||||||| | | ||||||||||||| || |||||||||||||||||| || |||||||||||||||||||    
T  19242517 atgtgtaacaaacacaagcttattaactcttaactaactcatgattacttgttgcacatgtcatcattctctaactaactg 19242437  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 20528496 - 20528573
Alignment:
Q  5 gtgtaacaaacacaagatcactaactcttaactatctaatgattacttgttgcacaggtaatcattctctaactaact 82  Q
    ||||||| ||||  ||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||    
T  20528496 gtgtaaccaacatgagatcactaactcttaattatctaatgattacttattacacaagtaatcattctctaactaact 20528573  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 2653402 - 2653532
Alignment:
Q  90 tacacaagtaatcctttcttagctgacatgatgtaatatccctcctcaagttggagattgatagatatcaatcattgcaagcttgaataataaagtatga 189  Q
    |||||||||||||||| ||||| ||| ||| ||| ||||| | | | ||||| ||| ||||||||||||||||||  | | |||  |||||| | |||||    
T  2653402 tacacaagtaatccttccttagatgatatgttgtgatatcacccataaagttagaggttgatagatatcaatcatccctaacttagataataga-tatga 2653500  T
Q  190 aaaggctgaggaagtagagatttggtgaagaa 221  Q
    ||||| |||||||||| |||||||||||||||    
T  2653501 aaaggttgaggaagtaaagatttggtgaagaa 2653532  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 26619398 - 26619491
Alignment:
Q  128 tccctcctcaagttggagattgatagatatcaatcattgcaagcttgaataataaagtatgaaaaggctgaggaagtagagatttggtgaagaa 221  Q
    |||| ||||||||||||| ||||||||| ||||||||  | | |||| ||| | || | ||||||||||||||||| ||||| || ||||||||    
T  26619398 tcccccctcaagttggaggttgatagatgtcaatcatctccaacttggatagtgaaatgtgaaaaggctgaggaagcagagacttagtgaagaa 26619491  T

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